Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1416 113 5e-20 seq986 96.9 4e-15 seq1169 89.7 6e-13 >seq1416 Length=13108 Score = 113 bits (124), Expect = 5e-20 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 42052 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCT 42111 |||| || |||||||| || ||||| ||||| || |||||||| | || | || |||| Sbjct 9290 CGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCT 9349 Query 42112 TGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 ||||| ||| | || |||| ||| | | | ||||||| ||||| || |||| |||| Sbjct 9350 TGTCC-TGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTG 9408 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||| ||||| || | ||||| ||||||||||||||| Sbjct 9409 ATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCATT 9447 Score = 107 bits (118), Expect = 2e-18 Identities = 129/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 42037 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096 ||| || ||| || |||| || |||||||| || ||||| ||||| || |||||||||| Sbjct 8898 CAGACAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGG 8957 Query 42097 CTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGAT 42155 || | | |||||||||| ||| | || || |||| || | | |||||| || Sbjct 8958 GCGGGATACCCTCCTTGTCC-TGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGAC 9016 Query 42156 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || | ||||||||| ||||| || || ||||| || ||||||||||| Sbjct 9017 TCGACCTCCAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | || || || | || || | |||||| || || || Sbjct 8097 CTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAACTGCTTCCCCGCAAA 8156 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || ||||| || | || | | ||||||||| ||| || ||||| | Sbjct 8157 GATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGGATCTTCGTTTTGACGTT 8216 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || ||||| |||| ||||| || ||||| || || ||||| || Sbjct 8217 CTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCAC 8276 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 8277 AAAGATTTGCAT 8288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | || || || |||| || || || || || ||||| Sbjct 8326 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAG 8385 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||||| || | | ||||||||| ||| || || | | Sbjct 8386 ATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTTT 8445 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||| || ||||| || | ||||| || || ||||| || || || || Sbjct 8446 TCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACG 8505 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 8506 AAGATTTGCAT 8516 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/198 (69%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| || | ||||| || |||| || || || || || ||||| Sbjct 8554 TCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAG 8613 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||||| || | | |||||||||| ||| || || | || Sbjct 8614 ATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGTCTTCACATTC 8673 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG-------TTTTGCCCGTTAGCGT 42190 | | ||||| |||||| || || | |||| |||| ||||| ||||| Sbjct 8674 TCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNNNNNNNNTTTTTCCCGTGAGCGT 8733 Query 42191 CTTTACAAAGATTTGCAT 42208 || || ||||||||||| Sbjct 8734 TTTGACGAAGATTTGCAT 8751 >seq986 Length=59218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 120/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 42052 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCT 42111 |||| || |||||||| || ||||| || || ||||||||||| | || | | |||| Sbjct 6328 CGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCT 6269 Query 42112 TGTCCATGATTTTTTGT-TTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGT 42169 ||||| ||| | || || |||| ||| | || | ||||| || ||||| |||| || Sbjct 6268 TGTCC-TGAATCTTGGTCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGT 6211 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || |||||||| || ||||| || ||||||||||| Sbjct 6210 GATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCAT 6172 >seq1169 Length=14909 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 42052 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCT 42111 |||| || |||||||| | ||||| ||||| | |||||||| | || | || ||||| Sbjct 5701 CGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATGCCCTCCT 5642 Query 42112 TGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || ||||| || | | |||||| ||| ||||| || | |||| Sbjct 5641 TGTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCAAGGGTGA 5582 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || ||||| ||||| || || ||||||||||| Sbjct 5581 TTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCAT 5545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199803633760