Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq972 113 4e-20 >seq972 Length=266462 Score = 113 bits (124), Expect = 4e-20 Identities = 215/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || ||||| ||||| || || ||||| || || | || || |||||| || | ||| Sbjct 234102 CCCACCCTCTTCAATGCCGGCACCCCTCACCCGCAACTCTCCTCCTGTTTCTTGCTCACG 234161 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| |||||||||| ||| |||| ||| | || || || |||| ||||| Sbjct 234162 ATGAAGGACGACTCCATCGACGGCATTTACGAAACTCTGAAAACTTGCGCGATGATCTCC 234221 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 ||| ||| || || ||||| || | ||| || | | || || ||| || ||||| Sbjct 234222 AAAACCGCTGGCGGTATCGGTATTAATGTGCATAAGATTCGCGCTTTGGGATCGTACATT 234281 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 || || || || ||||||||| | || || ||| | |||| | |||||| | Sbjct 234282 GCTGGCACGAACGGGTACTCCAACGGGATTGTGCCCATGTTGAGGGTATACAACAATACT 234341 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 ||||| || || ||||||||||| | | || ||| |||| || | ||| | ||| Sbjct 234342 GCGCGGTATGTTGACCAGGGTGGGAATAAGCGGCCTGGTGCTTTTGCTATTTATTTGGAG 234401 Query 94198 CCCTGGCACGCGGACGT 94214 || ||||| ||||| || Sbjct 234402 CCTTGGCATGCGGATGT 234418 Score = 109 bits (120), Expect = 5e-19 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 94453 AAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTC 94512 ||||||||| | |||| |||| ||| ||||||||| ||||||||| | | | Sbjct 234835 AAGCTGTGGTACGCGATCTTGGAATCGCAGACCGAGACGGGTGTGCCCTACATGCTCTAC 234894 Query 94513 AAGGACTC-TGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAA 94571 |||||| | ||| | ||| || ||||||||||| ||||||| || ||| || || Sbjct 234895 AAGGACGCGTGTAACCGCAAA-TCCAACCAGCAAAACCTCGGAACCATTAAGTGCAGTAA 234953 Query 94572 TCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGG 94631 || || || |||||||| || ||| ||||||| || ||| |||||||||| ||| ||| Sbjct 234954 CCTCTGTACTGAGATTGTTGAATATTCTTCTCCTGATGAGGTTGCTGTGTGCAACTTGGC 235013 Query 94632 CTCCATC 94638 |||||| Sbjct 235014 GTCCATC 235020 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 |||||||||| | | ||| | || || || || |||||||| || |||||||| |||| Sbjct 235518 CAAACACGGTATCAGGAACTCCCTCCTCGTCGCACCCATGCCGACCGCCTCCACCTCGCA 235577 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||||| ||||||||||| | |||||||||| ||| |||||| | |||| | ||||||| Sbjct 235578 AATCCTAGGCAACAACGAATGCTTCGAACCCTACACGTCCAACATCTACACCCGGCGGGT 235637 Query 95193 GCTCGCCGGGGAATTCC 95209 | ||| ||||||| Sbjct 235638 ATTGAGCGGTGAATTCC 235654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494711363747440