Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1026 140 3e-28 seq972 91.5 1e-13 seq1416 89.7 5e-13 seq999 89.7 5e-13 seq986 89.7 5e-13 >seq1026 Length=25707 Score = 140 bits (154), Expect = 3e-28 Identities = 299/439 (68%), Gaps = 11/439 (3%) Strand=Plus/Minus Query 52404 GTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTAC 52463 || || |||||| ||| ||||| | || || |||||| |||||| ||||||| | Sbjct 12794 GTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTTGCTTCCATCTTCTGG 12735 Query 52464 ATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGAC 52523 | || | | |||||| ||||||||||| || ||| |||||| | || || || ||| Sbjct 12734 CTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGAACTCATCTCCCGTGAC 12675 Query 52524 GAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTG 52583 ||||| || ||| || ||||| |||||| || || | | | | | |||| Sbjct 12674 GAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTTCA---CACAACTCAACCAAAAGCCC 12618 Query 52584 GATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTT 52643 | | || || | || || ||| || ||||||| |||||| | || || | Sbjct 12617 GCTCATGAAACCGTTCTCCAAATCATCACCGAAGCGGTGGGCATCGAACAAGAATTCCTC 12558 Query 52644 ACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC--ATGTGCGAGTACA 52701 || | ||| || || || | || | ||||||||| | |||| |||||| ||||| Sbjct 12557 ACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCC--GTCCTCATGTGCCGGTACA 12500 Query 52702 TCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCT 52760 ||||||| || || || ||||| | || | || ||| || ||| ||| |||||| Sbjct 12499 TCGAGTTCGTCGCTGACCGTCTCCTCGT-CGCCTTGGGATTCCCCAAGCACTACAACGCC 12441 Query 52761 CGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG-AGGGCAAGACCAACTTTTTCGA 52819 ||||| ||||| || ||| | ||||| |||| |||||||||||||||| || || Sbjct 12440 GAAAATCCCTTTGACTTCATGGAGTTGATTTC-CTTGCAGGGCAAGACCAACTTCTTTGA 12382 Query 52820 GAAGCGAGTCGGCGAGTAT 52838 |||| ||||| |||||| Sbjct 12381 GAAGAAGGTCGGGGAGTAT 12363 >seq972 Length=266462 Score = 91.5 bits (100), Expect = 1e-13 Identities = 182/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306 ||| |||||||||||| ||||| | |||||||||||| || | | |||||| Sbjct 234191 GTAAATGCCGTCGATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGG 234132 Query 154307 AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCAT 154366 | || || || ||||||||||| ||||| || || |||| | ||| Sbjct 234131 GTGAGGGGTGCCGGCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACAT 234072 Query 154367 CATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCG 154426 | ||| |||||||||||| | || | || || || ||||| |||| || || || Sbjct 234071 GAGTTCGTATGTTTCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACG 234012 Query 154427 CATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATT 154486 ||||||||||||||| || | ||| |||| | |||| || | ||| || Sbjct 234011 CATGAGCATGTGCTGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCG 233952 Query 154487 TTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 ||||||||| ||| | ||||| || ||||| Sbjct 233951 TTCGAGGGTCTTGAAGCCGAAGTAGTTGTA 233922 >seq1416 Length=13108 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||||| ||||| | || || || | | Sbjct 8095 GACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAACTGCTTCCCCGCA 8154 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| || || || || || ||||| || ||||| ||| || ||| | Sbjct 8155 AAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGGATCTTCGTTTTGACG 8214 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||||| |||| || | ||| || || || || || || Sbjct 8215 TTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTC 8274 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 8275 ACAAAGATTTGCAT 8288 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | || ||||| || |||||||||||| Sbjct 8290 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 8349 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || |||||||| |||| |||| ||||| || ||||| || || Sbjct 8350 AGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGG 8409 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | ||| | ||||||| ||||||||| Sbjct 8410 ATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACC 8469 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || ||||| || || || ||||| Sbjct 8470 TCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | || |||||||| |||||||||||| Sbjct 8518 CCGCCGCGAAGACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAG 8577 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||||||| |||| |||| ||||| || ||||| || || Sbjct 8578 AGAGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGG 8637 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||| | ||| || ||| Sbjct 8638 ATACCCTCCTTGTCCTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACC 8697 Query 138568 TC 138569 || Sbjct 8698 TC 8699 >seq999 Length=50871 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || ||||| | || | || | | | || |||||||| |||||||||||| Sbjct 17932 CCACCACGGAAACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAG 17991 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||||||| |||| |||| ||||| || ||||| || || Sbjct 17992 AGAGTGCGGTCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGA 18051 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||||| |||||| || | | ||| | ||||||| | ||||| | Sbjct 18052 ATGCCTTCTTTGTTCTGGATTTTCGTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATC 18111 Query 138568 TC 138569 || Sbjct 18112 TC 18113 >seq986 Length=59218 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||||||||| || || |||| |||| |||||||| ||||| || || || ||||| || Sbjct 6327 GTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCTT 6268 Query 138519 GTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTC 138576 ||| ||| | || || || | |||| | | |||||||| ||||||||||||| || Sbjct 6267 GTCC-TGAATCTTGGTCTTGACGTTGT-CAATGGTGTCGGAAGACTCCACCTCGAGGGTG 6210 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 | || || || || || || || || || || ||||||| Sbjct 6209 ATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCATGG 6170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250526922080