Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1026 136 4e-27 seq1416 95.1 1e-14 >seq1026 Length=25707 Score = 136 bits (150), Expect = 4e-27 Identities = 346/516 (67%), Gaps = 9/516 (2%) Strand=Plus/Minus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 |||||| | |||| |||||||| ||||| | | || ||| || | || || | Sbjct 12869 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTTCGATGGATCGAAGACAAGGAC-TCCGT 12811 Query 47130 CTG-GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT 47188 || || |||||| | ||||||||||| || ||||| |||||||||| ||| ||| Sbjct 12810 CTTCGCAGAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTT 12751 Query 47189 TGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGA 47248 ||| | || || | |||| | ||| | |||||||||||||| || |||||| Sbjct 12750 TGCTTCCATCTTCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGA 12691 Query 47249 GCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAG 47308 || ||||| | ||||||||||| ||| | | ||||| || ||| || | |||| Sbjct 12690 ACTCATCTCCCGTGACGAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTTC-ACAC--A 12634 Query 47309 AGTCGATCAAAAG-TTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCA 47367 | || | |||||| | | || ||||| | | || | ||||||| || | || Sbjct 12633 ACTCAACCAAAAGCCCGCTCATG-AAACCGTTCTCCAAATCATCACCGAAGCGGTGGGCA 12575 Query 47368 TTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGA 47427 | || || || || |||| ||||| |||| | | | || |||||| | | Sbjct 12574 TCGAACAAGAATTCCTCACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCCGTCC 12515 Query 47428 TGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAG-TATCCC 47486 | ||| | ||||||||| || ||||| ||||| || |||| || || | | ||| Sbjct 12514 TCATGTGCCGGTACATCGAGTTCGTCGCTGACCGTCTCCTCG-TCGCCTTGGGATTCCCC 12456 Query 47487 AAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAG 47546 ||| ||| || |||| ||||| || || || ||| | ||||| | |||||||| Sbjct 12455 AAGCACTACAACGCCGAAAATCCCTTTGACTTCATGGAGTTGATTTCCTTGCAGGGCAAG 12396 Query 47547 ACCAACTTTTTCGAGAAGCGCGTCGGCGAATATAAA 47582 |||||||| || |||||| ||||| || ||| || Sbjct 12395 ACCAACTTCTTTGAGAAGAAGGTCGGGGAGTATCAA 12360 >seq1416 Length=13108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| | ||| ||| ||| || | ||| || || Sbjct 8092 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAACTGCTTCCCC 8151 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | || |||||||| || || || ||||||||||| ||| ||| ||| Sbjct 8152 GCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGGATCTTCGTTTTG 8211 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | ||| ||||||| || | ||| |||||||| || || Sbjct 8212 ACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTC 8271 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 8272 TTCACAAAGATTTGCAT 8288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489423643360