Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1416 111 1e-19 seq986 82.4 7e-11 seq972 82.4 7e-11 >seq1416 Length=13108 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| || || || || ||| | Sbjct 8062 CCACCACGGAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 8121 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || || || || | || | |||||||| || || ||| Sbjct 8122 AGCGTACGACCATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGA 8181 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || ||||| || || ||||| || | || | |||||||| ||||| || Sbjct 8182 ATACCCTCCTTGTCTTGGATCTTCGTTTTGA-CGTTCTCGATAGTGTCGGAGGACTCCAC 8240 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| | ||| |||||||| || || || ||||| |||||||| Sbjct 8241 TTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | ||||||||||| || ||||||||||| || || ||||| Sbjct 9301 TGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATC 9360 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || ||||| || | || | ||||||||||| ||||| ||||| || | || ||||| Sbjct 9361 TTGGTTTTGA-CGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTGATGGTCTTGCC 9419 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| | ||| || ||||| |||||||| Sbjct 9420 GGTCAAAGTCTTCACAAAGATTTGCAT 9446 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || |||||||| ||||| || || ||| Sbjct 8287 ATACCACCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 8346 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | |||||| || ||| | || | ||||||||||| || Sbjct 8347 GAGAGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGG 8406 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || || || | ||| | |||||||| ||||| Sbjct 8407 GGGATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCC 8466 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || || || ||||| || || |||||||| Sbjct 8467 ACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 >seq986 Length=59218 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || |||||||| || ||||| ||||| || || ||||| Sbjct 6317 TGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATC 6258 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | ||||||||||||||| || ||||| || | || ||||| Sbjct 6257 TTGGTCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCC 6199 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || |||||||| Sbjct 6198 CGTAAGGGTCTTAACGAAGATTTGCAT 6172 >seq972 Length=266462 Score = 82.4 bits (90), Expect = 7e-11 Identities = 183/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||| |||| ||| | ||| || ||||||||||| || ||| | || | || || | Sbjct 233979 AAGATCGCAGAAAGGCCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCATGGTGAC 234038 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||| | || ||| | |||||| ||||| | ||||| |||| | ||||| ||||| Sbjct 234039 GACGTAGATGCCGCCATCGAAACATACGAACTCATGTCCGAAAAGTACTTCACCCACGCA 234098 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||||| | ||| |||||||| || || | || || ||||| |||||| Sbjct 234099 TCACCCACCCTCTTCAATGCCGGCACCCCTCACCCGCAACTCTCCTCCTGTTTCTTGCTC 234158 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||| |||| ||| || || |||||| || ||||||| |||| Sbjct 234159 ACGATGAAGGACGACTCCATCGACGGCATTTACGAAACTCTGAAAACTTGCGCGATGATC 234218 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCA 123172 |||||| | ||||| || || | || ||||| Sbjct 234219 TCCAAAACCGCTGGCGGTATCGGTATTAATGTGCA 234253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451992385823440