Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1026 136 5e-27 seq834 86.0 8e-12 seq972 84.2 3e-11 >seq1026 Length=25707 Score = 136 bits (150), Expect = 5e-27 Identities = 304/450 (68%), Gaps = 6/450 (1%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || ||||||||| |||||| |||||||| ||||| || | | | || |||||| Sbjct 12364 TACTCCCCGACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCAAGGAAATCAACTCCATG 12423 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGAC 127349 || ||||| || || | | ||| | ||| || | ||||| | |||||||| Sbjct 12424 AAGTCAAAGGGATTTTCGGCGTTGTAGTGCTTGG-GGAATCCCAAGGCGAC-GAGGAGAC 12481 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||| |||||| |||| | |||||||| ||||||||| | Sbjct 12482 GGTCAGCGACGAACTCGATGTACCGGCACATGAGGACGGAGTTCATGCCGATGAGGGCAA 12541 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||||| ||||| || ||| | | || ||| |||| ||||| | ||| | Sbjct 12542 CGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTGGA 12601 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCT-TGAAGAGTTCCACAGCAAACTCT 127528 ||| || || | || || ||| | | | | ||||||| |||||| || Sbjct 12602 GAACGGTTTCATGAGCGGG-CTTTTGGTTGAGTTGTGTGAAGAGGAGGCAAGCAAAATCG 12660 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 |||||| || |||||||||||||||||||| || ||||| || || ||||| | Sbjct 12661 CAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCATG 12720 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 || |||||||||| |||||| || | | ||| ||||| ||||||||||| ||||| || Sbjct 12721 CCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAGATACCCTCAACT 12780 Query 127649 CACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| || | ||||| || || ||| Sbjct 12781 GCGGCGAAAGCGACGAGACGTTCTGCGAAG 12810 >seq834 Length=203524 Score = 86.0 bits (94), Expect = 8e-12 Identities = 203/301 (67%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 176671 ATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACATCTTGATAATCCTTAC 176729 ||| ||||| ||||| | | || || || ||||| | |||| | |||| | || | Sbjct 45233 ATCAGTCATGATCATCAAATGGCCGTAACGCAAGCT-GTCCACATTCTCATAAACTTTTC 45291 Query 176730 CTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCG 176789 | || || | |||| || | |||| | |||| ||| |||| |||| ||| | Sbjct 45292 CGTGCTGCAACCCCATGATTTGTTTGATCGCGTTGATTTCTCCATTTGCAGTGATTTGAG 45351 Query 176790 CCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGAT 176849 | | ||| || || ||||| |||| ||||| ||||||||||| ||| | | | Sbjct 45352 CATGAGTAGCTTCCCGAACATTGAGCAACTTTCCGCGCAGAGGGAACACTCCGAAATTGT 45411 Query 176850 CACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 176909 | || || ||||| || || || | || ||| |||||| |||||||| || || |||| Sbjct 45412 CCCGTCCGACCACCGACAGGCCGGAAATTGCTGTGGTCTTAGCGGAATCTCCTTCGGTCA 45471 Query 176910 CGATGAGCGTACA---CTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACT 176966 ||| | ||| || ||||| ||| | ||||| || || ||||| ||| |||||| Sbjct 45472 AGATTAACGTGCAGTGTTTTCC--ATTACG-TGTCCCTGCATTATTCGCGTCGGCCAACT 45528 Query 176967 T 176967 | Sbjct 45529 T 45529 >seq972 Length=266462 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||||| |||||| || || ||||| || ||||| || | |||||| | |||||| Sbjct 235625 TAGATGTTGGACGTGTAGGGTTCGAAGCATTCGTTGTTGCCTAGGATTTGCGAGGTGGAG 235566 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || || ||||||||||| | ||| ||| ||| | || ||| Sbjct 235565 GCGGTCGGCATGGGTGCGACGAGGAGGGAGTTCCTGATACC 235525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613492521840240