Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1026 161 2e-34 >seq1026 Length=25707 Score = 161 bits (178), Expect = 2e-34 Identities = 341/504 (68%), Gaps = 11/504 (2%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || |||||||| || |||||||||||||||| || ||| || | |||||||| | || Sbjct 12373 ACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCAAGGAAATCAACTCCATGAAGTCAAAG 12432 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || || | ||| ||| |||| || ||||| | || | || | | ||| || || Sbjct 12433 GGATTTTCGGCGTTGTAGTGCTTGGGGAATCCCAAGGCGACGAGGAGACGGTCAGCGACG 12492 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 || |||||||| | ||||| | | |||| || || | || ||||||||| || Sbjct 12493 AACTCGATGTACCGGCACATGAGGACGGAGTTCATGCCGATGAGGGCAACGGGGAGAGCG 12552 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACG--TT 159881 || | || || || | || || | ||||||||||| | || || |||| ||| || Sbjct 12553 TCGGTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTG-GAGA-ACGGTTT 12610 Query 159882 CGTACCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 | | | ||| ||| | |||| | || |||||||| ||||| |||||||| Sbjct 12611 CATGAGCGGGCTTTTGGTTGAGTTGTG-----TGAAGAGGAGGCAAGCAAAATCGCAGTG 12665 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || || ||||| || ||||||| |||||||| | ||||||| ||||| || || || Sbjct 12666 GAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCATGCCTCG 12725 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | || ||||| || |||| ||||| | ||| || ||||| ||||| || || || Sbjct 12726 CTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAGATACCCTCAACTGCGGC 12785 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCA 160119 || || ||||| | || | || || || |||| | | |||| | ||||| Sbjct 12786 GAAAGCGACGAGACGTTCTGCGAAGACGGAGTCCTTGTCTTCGATCCATCGAAGAGCCCA 12845 Query 160120 TTCAGCCTTCTTTGCGATGCACGG 160143 || |||||||| |||||| || Sbjct 12846 GTCGGCCTTCTTGCGGATGCAGGG 12869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795136175911840