Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1416 134 3e-26 seq999 123 6e-23 seq986 100 7e-16 seq1169 84.2 5e-11 >seq1416 Length=13108 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| || || ||||| |||| ||||||||| | | || | || ||| Sbjct 8305 AGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 8364 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||||||||||||||| |||||||| || |||||||| ||| Sbjct 8365 TCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCC 8424 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| ||||| ||||| | | || || || | ||||| ||| Sbjct 8425 TGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTC 8484 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || || ||||| Sbjct 8485 TTCCCCGTGAGGGTTTTGACGAAGATTTG 8513 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| || | ||||||||| | | || | ||||| Sbjct 8077 AGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCC 8136 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||||||||| ||||| || || ||| || || || Sbjct 8137 TCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCT 8196 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| |||| ||||| | | || || || | ||||||||| Sbjct 8197 TGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTC 8256 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||| ||||| Sbjct 8257 TTGCCGGTGAGGGTCTTCACAAAGATTTG 8285 Score = 109 bits (120), Expect = 1e-18 Identities = 158/225 (70%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| || || || |||||||||| ||||||||| | | ||| Sbjct 8524 CGAAGACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTG 8583 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || || || ||||||||||||||||| |||||||| || || || Sbjct 8584 CGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCC 8643 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | | ||| || |||| Sbjct 8644 TCCTTGTCCTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGG 8703 Query 199589 GTGA-------TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| | || |||||||| ||||| || || ||||| Sbjct 8704 GTGANNNNNNNNNNTTTTTCCCGTGAGCGTTTTGACGAAGATTTG 8748 Score = 107 bits (118), Expect = 5e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 199458 CAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCG 199517 ||| |||||| | || || || |||||||| ||||||||||||||||| |||||||| | Sbjct 8898 CAGACAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGG 8957 Query 199518 GAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTT 199577 | || || || ||||||||||| ||| || |||| |||||| | | | Sbjct 8958 GCGGGATACCCTCCTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACT 9017 Query 199578 CTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||||||||| ||||| || || || || ||||| || ||||| Sbjct 9018 CGACCTCCAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTG 9066 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || || |||||||| ||||||||||||||||| |||||||| || ||| ||||| Sbjct 9289 CCGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCC 9348 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| || ||| |||| ||||| | | ||| || || | |||| Sbjct 9349 TTGTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTG 9408 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || | ||| |||||||| ||||| Sbjct 9409 ATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTG 9443 >seq999 Length=50871 Score = 123 bits (136), Expect = 6e-23 Identities = 154/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || || |||||||||| ||||||||| | | ||| | | || Sbjct 17947 AGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTCC 18006 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||||||||||||||| |||||||| || ||| |||||| | | Sbjct 18007 TCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTTC 18066 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||||||| ||||| ||||| | | ||| |||| | | ||| ||| Sbjct 18067 TGGATTTTCGTCTTCACGTTTTCGATCGTGTCGGAGG--TCTCCATCTCAAG-GATTGTC 18123 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || || ||||| Sbjct 18124 TTTCCCGTGAGCGTTTTGACGAAGATTTG 18152 Score = 111 bits (122), Expect = 4e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 199458 CAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCG 199517 ||| |||||| | || || || |||||||| ||||||||||||||||| |||||||| | Sbjct 19332 CAGACAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGG 19391 Query 199518 GAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTT 199577 || || || || ||||||||||| ||| || |||| |||||| | | | Sbjct 19392 GAGGGATACCCTCGTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACT 19451 Query 199578 CTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||||||||||| ||||| || || || || ||||| || ||||| Sbjct 19452 CGACCTCCAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTG 19500 >seq986 Length=59218 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || || |||||||| ||||||||||| |||||||||||||| || ||||||||| Sbjct 6329 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCC 6270 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||| ||| || | |||||| | | || || || | ||| Sbjct 6269 TTGTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTG 6210 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || || || || || ||||| Sbjct 6209 ATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTG 6175 >seq1169 Length=14909 Score = 84.2 bits (92), Expect = 5e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 199458 CAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCG 199517 ||| ||| || | || || || |||||||| | ||||||||||||| | |||||||| | Sbjct 5716 CAGACAAGGTGCGACCGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAG 5657 Query 199518 GAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTT 199577 | ||| || || || || ||||| || ||| |||| |||||| | | | Sbjct 5656 GGGGAATGCCCTCCTTGTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACT 5597 Query 199578 CTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || | ||||| ||||| |||||||| ||||| || || ||||| Sbjct 5596 CCACCTCAAGGGTGATTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTG 5548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178892689158238