Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1416 141 1e-28 seq999 113 5e-20 seq986 113 5e-20 seq1169 111 2e-19 seq144 87.8 2e-12 >seq1416 Length=13108 Score = 141 bits (156), Expect = 1e-28 Identities = 149/198 (75%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| |||||||| |||| ||||| || ||||||||||| Sbjct 8554 TCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAG 8613 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||||| ||| | | |||||||||| ||||||| |||| | || Sbjct 8614 ATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGTCTTCACATTC 8673 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGA-------TGGTTTTGCCCGTCAGCGT 46575 | | ||||| |||||| || |||| |||| |||| ||||| ||||| Sbjct 8674 TCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNNNNNNNNTTTTTCCCGTGAGCGT 8733 Query 46576 TTTAACAAAGATTTGCAT 46593 ||| || ||||||||||| Sbjct 8734 TTTGACGAAGATTTGCAT 8751 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||| Sbjct 8326 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAG 8385 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||||| || | | ||||||||| ||||||| |||| | | Sbjct 8386 ATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTTT 8445 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 8446 TCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACG 8505 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 8506 AAGATTTGCAT 8516 Score = 122 bits (134), Expect = 1e-22 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 46429 AGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCAC 46488 |||||| |||| |||||||||||||||||||| || | || |||||||||| ||| | Sbjct 8905 AGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGAT 8964 Query 46489 GCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATC 46548 | |||||||||| ||||| |||||| || | | |||||| || || || || Sbjct 8965 ACCCTCCTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTC 9024 Query 46549 CACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||| ||||| || || || || || ||||||||||| Sbjct 9025 CAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || || || |||| || |||||||| |||||||| || | || |||||||| | Sbjct 9277 GAGAGGGTACGACCGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGG 9336 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||||||||| ||||| | |||| || | | ||||||| ||||| Sbjct 9337 GGAATGCCTTCCTTGTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCG 9396 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | ||||||||| ||||| |||| || || ||||||||||||||| Sbjct 9397 ACCTCGAGCGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCATT 9447 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || || || | || || | |||||| || || || Sbjct 8097 CTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAACTGCTTCCCCGCAAA 8156 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| || | || | | ||||||||| ||||||| | |||| | Sbjct 8157 GATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGGATCTTCGTTTTGACGTT 8216 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || ||||| || | ||||| || ||||| || || || || || Sbjct 8217 CTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCAC 8276 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 8277 AAAGATTTGCAT 8288 >seq999 Length=50871 Score = 113 bits (124), Expect = 5e-20 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||| Sbjct 17968 TCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTCCTCGAGTTGTTTGCCGGCGAAG 18027 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | || || |||| | ||| ||| |||| | | Sbjct 18028 ATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTTCTGGATTTTCGTCTTCACGTTT 18087 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||||| | |||| || | ||| || || ||||| |||||||| || Sbjct 18088 TCGATCGTGTCGGAGGTCTCCATCTCAA---GGATTGTCTTTCCCGTGAGCGTTTTGACG 18144 Query 46583 AAGATTTGCAT 46593 |||||||| || Sbjct 18145 AAGATTTGTAT 18155 Score = 109 bits (120), Expect = 6e-19 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 46429 AGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCAC 46488 |||||| |||| |||||||||||||||||||| || | || |||||||||| || | Sbjct 19339 AGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGAGGGAT 19398 Query 46489 GCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATC 46548 | ||| |||||| ||||| |||||| || | | |||||| || || || || Sbjct 19399 ACCCTCGTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTC 19458 Query 46549 CACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGC 46591 || ||||||||| ||||| || || || || || ||||||||| Sbjct 19459 CAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGC 19501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 46435 CTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCT---GCTGGTCGGCCGGCACGCT 46491 |||||| ||||| || ||||||||||| | | | | ||||||| ||| | | Sbjct 19036 CTCGTCCTCGAGTTGTTTGCCGGCGAAGACGTTGTGGAAACGTTGGTCGGGCGGGATACC 19095 Query 46492 CTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCAC 46551 ||||||| || ||||||| |||| | || | | ||||| |||||| | |||| Sbjct 19096 CTCCTTGCCCTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGGCCTCCAG 19155 Query 46552 CGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| || || |||||||| || ||||||||||| Sbjct 19156 GGTGATAGTTTTCCCTGTGAGCGTTTTGACGAAGATTTGCAT 19197 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/184 (70%), Gaps = 12/184 (7%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||| |||| ||||||||||| |||||||| | | ||||| || ||||||||||| Sbjct 18199 TCCTTTGGGATGTTGTAGTCGGAGAGAGTGCG---GCCCTCGAGTTGTTTGCCGGCGAAG 18255 Query 46463 ATCAAGCGCT---------GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 || | || | || |||||| | | | | |||||||||| ||||||| || Sbjct 18256 ATGAGACGTTGCAGGAAACGCGGGTCGGACAGGATACCCTCCTTGTCCTGGATCTTCGTC 18315 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | || | | ||||| |||||| || |||| ||||| | ||| ||| || Sbjct 18316 TTCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGGGTGATAGCTTTTTGCGTGAGG 18375 Query 46574 GTTT 46577 |||| Sbjct 18376 GTTT 18379 >seq986 Length=59218 Score = 113 bits (124), Expect = 5e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || ||||| |||| |||||||||||||||||||| || | ||||||||||| | Sbjct 6341 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGG 6282 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTC 46542 || | | ||||||||| ||||| |||||| ||| | || | ||||| || || Sbjct 6281 GGAATTCCTTCCTTGTCCTGAATCTTGGTCTTGA-CGTTGTCAATGGTGTCGGAAGACTC 6223 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | ||||| || |||||||| || || ||||| ||||||||||| Sbjct 6222 CACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCAT 6172 >seq1169 Length=14909 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 46430 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACG 46489 ||||| |||| ||||||||||||| |||||| || | | |||||||| | || | | Sbjct 5708 GTGCGACCGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATG 5649 Query 46490 CTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCC 46549 | ||||||||| ||||||| | |||| || | | |||||| ||| ||||| || Sbjct 5648 CCCTCCTTGTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCA 5589 Query 46550 ACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| || || ||||| |||||||| || ||||||||||| Sbjct 5588 AGGGTGATTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCAT 5545 >seq144 Length=180981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| | |||||| || || ||||||||||| || ||||| | Sbjct 92571 CCTTCTGGATGTTGTAGTCGGACAAAGTGCGGTCATCCTCGAGCTGCTTACCAGCGAAGA 92512 Query 46464 TCAAGCGCTGCTGGTC 46479 |||| ||||||||||| Sbjct 92511 TCAAACGCTGCTGGTC 92496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224876671280