Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1026 232 7e-56 seq1416 154 1e-32 seq999 138 1e-27 seq1169 104 2e-17 >seq1026 Length=25707 Score = 232 bits (256), Expect = 7e-56 Identities = 394/569 (69%), Gaps = 14/569 (2%) Strand=Plus/Plus Query 132542 CTGCGCACTAAAAGTCCGCATCCAAAGTAAAGGTGTC---------GTCCTTGGCAAACA 132592 || ||| || ||||| || |||||||| ||||||| ||||||| || Sbjct 12290 CTCCGCCTTAGAAGTCGGCCTCCAAAGTGAAGGTGTTTGCAGAGGAGTCCTTGTT---CA 12346 Query 132593 TCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCA 132652 | ||||| |||||||| || || ||||| |||||||| || || || || |||| || Sbjct 12347 TGACGCCGGCCTTTTGATACTCCCCGACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCA 12406 Query 132653 AGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCA 132712 ||||||| | | ||| || || ||||| || | | |||||||||||||| | || Sbjct 12407 AGGAAATCAACTCCATGAAGTCAAAGGGATTTTCGGCGTTGTAGTGCTTGGGGAATCCCA 12466 Query 132713 GGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAA 132772 | ||||||| || | ||| || |||||||||||||| | ||||| || | || | Sbjct 12467 AGGCGACGAGGAGACGGTCAGCGACGAACTCGATGTACCGGCACATGAGGACGGAGTTCA 12526 Query 132773 GTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGT 132832 || | || || || || || |||||||| || ||| |||||| | ||||| | Sbjct 12527 TGCCGATGAGGGCAACGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACCGCTT 12586 Query 132833 CGGTGACGATTTCCCTAACGCGCGC-CGCGCTCGGCCGTTGCACCAAATGCTTGAACATC 132891 |||||| ||||| |||| | | || ||| ||| | || |||| | Sbjct 12587 CGGTGATGATTTGGAGAACGGTTTCATGAGC-GGGCTTTTGGTTGAGTTGTGTGAAGAGG 12645 Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 | ||||||||| ||||| || | ||| ||||| | ||| |||||||||||| |||||| Sbjct 12646 AGGCAAGCAAAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTG 12705 Query 132952 AAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAG 133011 | ||||||||| | ||| || || || ||||| || |||| || || ||| || ||| Sbjct 12706 AGGCCGGGCATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAG 12765 Query 133012 AAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG 133071 |||| ||||| || || |||||||| || || || || |||| || || ||| Sbjct 12766 AAGATACCCTCAACTGCGGCGAAAGCGACGAGACGTTCTGCGAAGACGGAGTCCTTGTCT 12825 Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 ||||||| || || ||||| |||||||| Sbjct 12826 TCGATCCATCGAAGAGCCCAGTCGGCCTT 12854 Score = 154 bits (170), Expect = 1e-32 Identities = 200/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| | | ||| |||||||| ||| | |||||| || ||| ||||| Sbjct 12982 GTAGGTGTCGATCAAGAGCGAGTACATTTCACTGTGAATGTTCTCAATCATGATCTGAAA 13041 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || ||||| || || || | ||| ||||| | ||| |||||||| || || Sbjct 13042 GCCATAGAAGCAGCGGGCTTCAGGGATCTGGACTTCATTGCTGAAGCGCTCGACGAGGTT 13101 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||| ||||| || ||||| ||||| || ||| | |||||| | || Sbjct 13102 TTCGTTGACGATACCGTCAGACGCAGCGAAGAAGGCAAGGACGCGGGAGATGAAGTAACG 13161 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 |||| ||| || | || ||||||||| | ||||||||| ||||| || || || Sbjct 13162 TTCGTCGTCATTGAGACGGTTTTCCCAGTCGACCAGGTCCTTGGAAAGGTCGACTTCTTC 13221 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || || ||||| ||||||||||| Sbjct 13222 AGCAGTCCAGAAAGAAGCTTCGGCCTTTTTGTACAT 13257 >seq1416 Length=13108 Score = 154 bits (170), Expect = 1e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| |||||||| || || |||||| | || || ||| || || Sbjct 8516 ATGCAAATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCTCC 8457 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | || | | |||| || |||| ||||| || ||||| ||| ||||||| Sbjct 8456 GACA-CGATCGAAAACGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCA 8398 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| |||||||| || || |||| ||||||||| ||||||||| Sbjct 8397 GCAACGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGCCGCACCCTCTCCGACTACAA 8338 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || ||| | || || ||| Sbjct 8337 CATCCAGAAGGAATCCACCCTCCATCTCGTCCTCCGT 8301 Score = 118 bits (130), Expect = 1e-21 Identities = 169/236 (72%), Gaps = 11/236 (5%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCA-------TCACCGTCGACGTCGA 38296 |||||||| ||||| |||||||||||||| |||| ||||| | || ||||| Sbjct 8751 ATGCAAATCTTCGTCAAAACGCTCACGGGAAAAANNNNNNNNNNTCACCCTGGAGGTCGA 8692 Query 38297 GGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCC 38354 | | |||| | | | || | | |||| || |||| ||||| ||||| || || Sbjct 8691 ATCGTCGGACACCATCGAGAATG--TGAAGACGAAGATCCAGGACAAGGAGGGTATCCCG 8634 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 ||||||| || || ||||| | ||| |||||||| || || |||| ||||| ||| | Sbjct 8633 CCCGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCC 8574 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||||||||| | || || || | || || ||| | | ||||| Sbjct 8573 GACTACAACATCCAAAAGGAATCCACCCTTCACCTCGTCCTCCGTCTTCGCGGCGG 8518 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| || ||||| |||| || ||| || || Sbjct 8288 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAGTCCTCC 8229 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | ||| || |||| ||||| ||||| |||||| | || || Sbjct 8228 GACACTATCGAGAACG-TCAAAACGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCA 8170 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||||| || ||| |||| || | || || ||| ||||||||| Sbjct 8169 GCAACGTCTCATCTTTGCGGGGAAGCAGTTGGAGGATGGTCGTACGCTCTCCGACTACAA 8110 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| || || | ||||| ||| Sbjct 8109 CATTCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGT 8073 >seq999 Length=50871 Score = 138 bits (152), Expect = 1e-27 Identities = 164/219 (75%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 || ||||| ||||| |||||||||||||| || || ||| | || | ||| || || Sbjct 18155 ATACAAATCTTCGTCAAAACGCTCACGGGAAAGACAATCC---TTGAGATGGAGACCTCC 18099 Query 38304 GACAGCGTGCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | || | | |||| ||||||| ||||||| || |||||| | ||||| Sbjct 18098 GACA-CGATCGAAAACGTGAAGACGAAAATCCAGAACAAAGAAGGCATTCCCCCTGACCA 18040 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| |||||||| || || ||||| ||||| ||| ||||||||| Sbjct 18039 GCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGACCGCACTCTCTCCGACTACAA 17980 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 ||||||||||||| | || || || | || || ||||| Sbjct 17979 CATCCAAAAGGAATCCACCCTTCACCTCGTCCTCCGTTT 17941 >seq1169 Length=14909 Score = 104 bits (114), Expect = 2e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| |||||||||||||| || || |||||| | || || ||| | || Sbjct 5545 ATGCAAATCTTCGTCAAAACGCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCGTCC 5604 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | ||| || |||| ||||| ||||| |||||| | ||||| Sbjct 5605 GACACCATCGAGAACG-TCAAAACGAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCA 5663 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || | ||||| | ||| |||| ||||| || |||| |||||| Sbjct 5664 GCAACATCTCATCTTCGCCAGCAAGCAGCTCGAGGACGGTCGCACC 5709 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 38367 CGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 38426 || ||||| | ||| |||||||| || || |||| ||||| ||| ||||||||||||| Sbjct 5440 CGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCCGACTACAACATC 5499 Query 38427 CAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| | || || ||| | || || ||| | | |||||| Sbjct 5500 CAAAAGGAATCCACCCTCCATCTCGTCCTCCGTCTTCGCGGCGGC 5544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160833365760