Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq79 271 1e-67 seq1600 114 2e-20 seq274 102 1e-16 seq972 82.4 1e-10 >seq79 Length=2492 Score = 271 bits (300), Expect = 1e-67 Identities = 506/741 (68%), Gaps = 14/741 (2%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| || | |||||| || ||||| | || ||||| || || || ||||||||||| Sbjct 1136 TCACCGGTAAGGATGGCAGCCTGGACGGCGGCACCGTAGGCAACGGCTTCATCGGGGTTG 1077 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || |||| || ||||| || | || || | | | || | || ||| Sbjct 1076 ATGGACTTGTTAGGTTCCTTTCCGTTGAAGAAGTCAGAGACGAGCTTCTGGACCTTAGGG 1017 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACT---TTCGATTTATCGATCTTT 7186 || || || || |||||||| | ||||| || | || ||| || || ||||| Sbjct 1016 ATACGGGTGGAACCACCGACGAGGACGATGTCGTGGACGGAGTTC---TTGTCCATCTTG 960 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 | ||| || || || ||||| || || | ||||| | ||| || || Sbjct 959 GCGTCACGGAGGACCTTCTCGACGGGGTCAAGGGTGGAGCGGAAGAGGTCAGCGCAGAGC 900 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 || || ||||| |||||||| ||||| || ||||| ||||| || ||||| | || ||| Sbjct 899 TCTTCGAAACGGGCACGGGTGATGGAGGTGTAGAAGTCAACACCCTCGTAGAGGGAGTCA 840 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 ||||| |||| || || || | || || | || |||||||| || || || || || Sbjct 839 ATTTCGATGGAGGTCTGGGCGGCAGAGGAGAGGGTACGCTTTGCACGTTCGCAAGCGGTA 780 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | ||| || |||| ||| ||||| || | || ||||| || || || ||| Sbjct 779 CGGAGACGGCGGAGGGAACGGGGGTTGGAAGAGAGGTCCTTCTTGAACTTGCGCTTGAAC 720 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || || ||||||| | ||| | ||||| || |||||||||||||| || || Sbjct 719 TCCTCGCAGAAGTGAGAGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCA 660 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || || || || || || || |||||||| | ||||| | | | || ||||| || Sbjct 659 CCGGCAGTGGCCTTAACCTCGAAGATACCGTCCTCAATTGTGAGGAGGGAGACATCGAAG 600 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC----GTCGTCTTTGTTCTTATC 7602 |||||||| || || || |||||||| |||||| | || || | ||| ||| || Sbjct 599 GTACCACCTCCAAGATCGAAAATGAGAACGTTCCTCTCCCCAGTGGCCTT----CTTGTC 544 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCC 7662 ||||||||| ||||| || || || || || || || || ||||| || ||||| || Sbjct 543 GAGACCGTAAGCGATGGCGGCGGCGGTGGGCTCGTTGATGATACGGAGGACGTTCAAACC 484 Query 7663 AGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 ||| || | || || || || || || ||||| || ||||| |||||||| ||||| Sbjct 483 AGCGATGACACCAGCGTCCTTGGTGGCCTGACGTTGGGAGTCGTTGAAGTAGGCGGGGAC 424 Query 7723 CGTTACGACCGCGTCCGTGAC 7743 || || || || ||| |||| Sbjct 423 AGTGACAACGGCATCCTTGAC 403 >seq1600 Length=33002 Score = 114 bits (126), Expect = 2e-20 Identities = 133/179 (74%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | |||||| || || || || ||||| ||||||||||||| ||||||||| Sbjct 29430 CCGATCAAACGCTTAGCGTCGAAGACGGTGTTGGTGGGGTTCATGGCGACTTGGTTCTTT 29371 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | | | | || ||||| || || ||||| || Sbjct 29370 GCGGCATCACCAATGAGACGCTCGGTGT---CGGAGAAAGCGACATATGAGGGGGTGGTG 29314 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || ||||||||||| || || ||||| || ||||| |||||||| || || || || Sbjct 29313 CGGTTTCCTTGGTCGTTGGCGATGATTTCGACACGGTCATTTTGCCACACTCCCACACA 29255 >seq274 Length=174143 Score = 102 bits (112), Expect = 1e-16 Identities = 179/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 7471 ACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAA 7530 ||||||||| || || || || || || || |||| ||| | |||||| | || Sbjct 154658 ACCCAAGTGAGTGTCACCGTTAGTGGCCAACACCTCGAAGACACCCTCGTCAATGGTCAA 154599 Query 7531 CAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC 7590 | |||||||| || |||||||| |||| ||| || | ||| | |||| | || Sbjct 154598 GACGGAAACATCGAAAGTACCACCTCCCAAGTCGAAGACGAGGATGTTC------TGCTC 154545 Query 7591 TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650 || ||||| ||||||||||| ||||| || || || || || || || |||||||| Sbjct 154544 CTTCTTCTTGTCGAGACCGTAGGCGATGGCGGCGGCGGTGGGCTCGTTGATAATACGCTC 154485 Query 7651 ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAA 7710 | |||| || || || | || || || || || || ||||| | ||||| || Sbjct 154484 AACCTTCAAACCGGCGATGACACCGGCGTCCTTAGTGGCCTGACGTTGGGCGTCGTTGAA 154425 Query 7711 GTAGGCCGGGACCGTTACGAC 7731 |||||| || || || ||||| Sbjct 154424 GTAGGCGGGAACAGTGACGAC 154404 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 ||||| || || || | ||||| | ||||| |||| | |||||||| || ||||| Sbjct 154103 CGCTTGGCGTCGAAGATGGTGTTCTCAGGGTTGGTGGCGGCCTGGTTCTTGGCGGCGTCA 154044 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 |||| ||||| || || ||| || || |||||||| || ||||| | || || ||| Sbjct 154043 CCGACGAGACGCTCGCCATCTTCGGTGAAGGCGACGTAGGAGGGGGTAATACGGTTACCT 153984 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 |||||||| || || ||||| ||| |||||| |||| || || || Sbjct 153983 TGGTCGTTGGCGATGATTTCGACGTTACCGTTTTTGTAGACACCAACACA 153934 >seq972 Length=266462 Score = 82.4 bits (90), Expect = 1e-10 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 105883 GTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATT 105942 || |||||||| |||||||| || ||||| ||| | || |||||| || || | | Sbjct 234196 GTTTCGTAAATGCCGTCGATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGT 234137 Query 105943 TGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTC 106002 || || || || || |||||||| || || |||| ||| || |||| | | |||| Sbjct 234136 TGCGGGTGAGGGGTGCCGGCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTA-CTTTTC 234078 Query 106003 GATAACGC-TTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGC 106061 | | | |||||||||||| | | || ||| | |||| ||||||||||| | ||| Sbjct 234077 GGACATGAGTTCGTATGTTTCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGC 234018 Query 106062 GACGCGCAT 106070 || ||||| Sbjct 234017 AACACGCAT 234009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635117604447760