Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1026 114 2e-20 seq972 87.8 2e-12 >seq1026 Length=25707 Score = 114 bits (126), Expect = 2e-20 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||||| || || | ||||| || || |||||| | ||| | || |||| | | | Sbjct 12873 AGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTTCGATGGATCGAAGACAAGGACTC 12814 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 || || || || || ||| |||| || || |||||||||||||||||||| || | Sbjct 12813 CGTC-TTCGCAGAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCT 12755 Query 102229 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 |||| ||| | || | ||||| ||||||||||| | ||||| || ||| |||||| Sbjct 12754 CCTT-TGCTTCCATCTTCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCC 12696 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| || ||||| |||||||| || |||||| || ||||| Sbjct 12695 AACGAACTCATCTCCCGTGACGAAGGCCTCCACTGCGATTTTGC 12652 >seq972 Length=266462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 178/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| || ||| ||||| ||||||| || || ||||||| ||||| || || | ||| Sbjct 233988 GAAAGGCCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCATGGTGACGACGTAGAT 234047 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAAC 111724 | | | || |||||||| |||||| ||| |||| ||||||| |||| || Sbjct 234048 GCCGCCATCGAAACATACGAACTCATGTCCGAAAAGTAC-TTCACCCACGCATCACCCAC 234106 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 ||||||||| || || || || || ||| | ||| |||||| | | | | || Sbjct 234107 CCTCTTCAATGCCGGCACCCCTCACCCGCAACTCTCCTCCTGTTTCTTGCTCACGATGAA 234166 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAG 111842 ||| || || ||| | |||||||||| ||||| | || ||| | | ||||| || Sbjct 234167 GGACGACTCCATCGACGGCATTTACGAAACTCTGA--AAACTTGCGCGATGATCTCCAAA 234224 Query 111843 TGGGCTGGTGGTATCGGGAT 111862 ||||| |||||||| || Sbjct 234225 ACCGCTGGCGGTATCGGTAT 234244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727548738080