Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq972 102 1e-16 seq168 95.1 1e-14 seq1685 93.3 5e-14 seq1631 91.5 2e-13 seq968 91.5 2e-13 seq87 91.5 2e-13 seq1201 89.7 6e-13 seq986 89.7 6e-13 seq605 89.7 6e-13 seq135 89.7 6e-13 seq90 89.7 6e-13 >seq972 Length=266462 Score = 102 bits (112), Expect = 1e-16 Identities = 404/627 (64%), Gaps = 14/627 (2%) Strand=Plus/Minus Query 109531 CCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTAC 109590 || || ||||| ||||| || || ||| ||| || ||||| ||||| |||||||| || Sbjct 235847 CCGCGCTCAGCAGCCATATCAATAATAACCTTCTGACTAATCTCCCAAACAGTCTTATAA 235788 Query 109591 AAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACC 109650 | |||| | || || ||||| ||| || | |||| | || || || | Sbjct 235787 ATCCTCTTCAACTCCTCCGGAATCTCCCGAATCCTCTGAACACTCCCCCCCTCCGCAATA 235728 Query 109651 ATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CAACAAGATG 109709 || | | |||||||| | ||| | | | || | | ||| | |||||| ||| Sbjct 235727 ATCCGGTTCTTCATCTTATCATCCCACAAATTCAACTCCGTCAAATCTTTCAACAA-ATG 235669 Query 109710 CTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTA 109769 || || || | |||||||| | | || ||| ||||||||| | |||||| Sbjct 235668 CTGATTCACAATCTGGAATTCACCGCTCAATACCCGCCGGGTGTAGATGTTGGACGTGTA 235609 Query 109770 GGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGC 109829 ||||||||| || || ||||||||||||||||| | ||||| || || |||||||| || Sbjct 235608 GGGTTCGAAGCATTCGTTGTTGCCTAGGATTTGCGAGGTGGAGGCGGTCGGCATGGGTGC 235549 Query 109830 CATGAGAAGACTGTTTCGGAGACC--CTTCGTCTTTACCCGCTCACGCATTGCGTCCCAA 109887 | ||| || ||| | || ||| || | | | | | || | | || |||| Sbjct 235548 GACGAGGAGGGAGTTCCTGATACCGTGTTTGGCGATTTGGGAT--CGGAGTTCGGCCCAG 235491 Query 109888 TCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCA 109947 || | || | | | |||| | | |||||| |||||||| || ||||||| Sbjct 235490 TCCCATCGGTC-CGA-----GGTCTTGACGTTCCACATGTCTGGTTGGAGGACACCCT-T 235438 Query 109948 GCAG-CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGA 110006 || | |||| |||| || | || |||| ||| || || ||||||||| | || Sbjct 235437 GCTGACAGGGCTTCCCTCATAAGTTTCATACGTCCCTTCCTTCTGAGCCAACTCGCAAGA 235378 Query 110007 AGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTC 110066 ||| || || || ||| ||||| |||||| || | || | | || | ||| Sbjct 235377 AGCTTCAAGGGCAGCAAAGTACATCGTCTCACTGATGTCGCGGTTGAGCTGACGGGCCTC 235318 Query 110067 TTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAG 110126 || | |||||||| | | ||| || | || || ||||| || || || || Sbjct 235317 TTGCGAATCGAAGGGCATGCGCATCTTAATGAAAGCGTCGGCAAGACCTTGGACGCCCAG 235258 Query 110127 ACCAATGGGGCGATGCTTCATGTTAGA 110153 ||| |||||||| || |||||| || Sbjct 235257 ACCGATGGGGCGGTGGCGCATGTTCGA 235231 >seq168 Length=152933 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 135171 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 135230 Query 136777 GGGAACA--GCTTTTAGATATATTTT 136800 | || || |||||| | | | |||| Sbjct 135231 GTGAGCATTGCTTTTTGTTTTTTTTT 135256 >seq1685 Length=98515 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 59920 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 59861 Query 136777 GGGAACAGCTT 136787 | || ||| || Sbjct 59860 GTGAGCAGTTT 59850 >seq1631 Length=33487 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 29654 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 29595 Query 136777 GGGAACAG 136784 | || ||| Sbjct 29594 GTGAGCAG 29587 >seq968 Length=13775 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 13250 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 13191 Query 136777 GGGAACAG 136784 | || ||| Sbjct 13190 GTGAGCAG 13183 >seq87 Length=11443 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 10593 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 10534 Query 136777 GGGAACAG 136784 | || ||| Sbjct 10533 GTGAGCAG 10526 >seq1201 Length=79685 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 78451 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 78510 Query 136777 GGGAACA 136783 | || || Sbjct 78511 GTGAGCA 78517 >seq986 Length=59218 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 7525 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 7466 Query 136777 GGGAACA 136783 | || || Sbjct 7465 GTGAGCA 7459 >seq605 Length=38672 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 34528 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 34469 Query 136777 GGGAACA 136783 | || || Sbjct 34468 GTGAGCA 34462 >seq135 Length=53906 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 28761 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 28702 Query 136777 GGGAACA 136783 | || || Sbjct 28701 GTGAGCA 28695 >seq90 Length=7786 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| || Sbjct 3206 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGATCCCTGTA 3265 Query 136777 GGGAACA 136783 | || || Sbjct 3266 GTGAGCA 3272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961908749200