Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1026 116 4e-21 seq972 89.7 6e-13 seq834 87.8 2e-12 >seq1026 Length=25707 Score = 116 bits (128), Expect = 4e-21 Identities = 335/501 (67%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 116985 ATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCAT-CAAGGCTAATGTTTTCCA 117043 ||| ||||| || ||||||||||||||||||||| || | ||||| ||| |||| Sbjct 12363 ATACTCCCCGACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCAAGGA-AATCAACTCCA 12421 Query 117044 TAAAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCCCAACTTGTTTGAGGAG 117101 | |||||||| ||||| | ||||| | | || || | ||||| | |||||| Sbjct 12422 TGAAGTCAAAGGGATTTTCGGCGTTGTAGTGCTTGG-GGAATCCCAAGGCGAC-GAGGAG 12479 Query 117102 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT 117161 ||| || | || |||| |||||| | |||| | |||||||| |||||||| Sbjct 12480 ACGGTCAGCGACGAACTCGATGTACCGGCACATGAGGACGGAGTTCATGCCGATGAGGGC 12539 Query 117162 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 117221 | ||||| ||||| || ||| ||| || || | ||||| || | | ||| Sbjct 12540 AACGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTG 12599 Query 117222 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCT-TGAAGAGCTCCACGGCAAACT 117280 | | | ||||| || ||| || || | | | ||||||| ||||| | Sbjct 12600 GAGAACGGTTTCATGAGCGGG-CTTTTGGTTGAGTTGTGTGAAGAGGAGGCAAGCAAAAT 12658 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | |||||| || || || ||||| || ||||| || ||||| ||||| ||||| | Sbjct 12659 CGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCA 12718 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || |||||||||| ||| | || | ||| || || |||||||||||||||||||| Sbjct 12719 TGCCTCGCTTCTTCAGCCAGAAGATGGAAGCA-AAGGAGCCGGAGAAGAAGATACCCTCA 12777 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTT 117458 || || || || | || || || ||||| || ||| | |||| || | |||| Sbjct 12778 ACTGCGGCGAAAGCGACGAGACGTTCTGCGAA-GACGGAGTCCTTGTCTTCGATCCATCG 12836 Query 117459 CATTGCCCATTTCGCCTTCTT 117479 | ||||| | |||||||| Sbjct 12837 AAGAGCCCAGTCGGCCTTCTT 12857 >seq972 Length=266462 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 |||||| | || || |||| ||| ||||| ||||| | | || | ||| || ||| Sbjct 234199 AGAGTTTCGTAAATGCCGTCGATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAG 234140 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-C 107223 | ||||| || || || |||||||||||||| |||| |||||| |||| ||| Sbjct 234139 AGTTGCGGGTGAGGGGTGCCGGCATTGAAGAGGGTGGGTGATGCGTGGGTGAA-GTACTT 234081 Query 107224 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 || |||||| |||||||| || | | | | ||| | ||| || || || || |||| Sbjct 234080 TTCGGACATGAGTTCGTATGTTTCGATGGCGGCATCTACGTCGTCACCATGAATACCGAC 234021 Query 107284 GGCCACACGCATAAACATGTATTGGGGTGTTTC 107316 || |||||||| | ||||| || || |||| Sbjct 234020 AGCAACACGCATGAGCATGTGCTGAGGCCTTTC 233988 >seq834 Length=203524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGC-GA 169419 ||| || || |||||||| || ||| | | ||||| ||||| ||| | |||| | || Sbjct 83468 CTTTCCTCGCAGAGGAAACACTCCAAAATTGTCACGGCCAACAACGCTCA-ACCCACTGA 83410 Query 169420 CCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCG 169479 ||| |||| ||| ||||||||||| ||||| | ||| | ||||||| | | || | Sbjct 83409 TCGCCAGGGCTTTGGCTGAATCACCTTCCGTCAAAATCAAGGTACACCCTTGACCTTTCT 83350 Query 169480 CCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAG 169521 ||| ||||| ||||| |||||||| | ||| ||| |||| Sbjct 83349 TCGTCCCCGCGTTGTTAGCGTCGTCGAGCTTACTAATTCCAG 83308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966684709360