Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq999 136 9e-27 seq1416 127 5e-24 seq986 127 5e-24 seq1169 118 2e-21 >seq999 Length=50871 Score = 136 bits (150), Expect = 9e-27 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||| || ||||| || ||||| |||| ||||| | | || ||| Sbjct 17950 ACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTCCTCG 18009 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || |||||||| || ||||| ||||| || |||||||||||||||| || Sbjct 18010 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTTCTGG 18069 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| ||||| || || ||||| || | |||| |||||| | |||||| Sbjct 18070 ATTTTCGTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATCTCAAGG---ATTGTCTTT 18126 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||| || Sbjct 18127 CCCGTGAGCGTTTTGACGAAGATTTGTAT 18155 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || |||||||| || ||||| ||||| ||||| || || || Sbjct 19346 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGAGGGATACCCTCG 19405 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || |||||| ||||| |||||||| ||| || || || | || Sbjct 19406 TTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAACGTG 19465 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 | ||||| || || | || || ||||| | |||| Sbjct 19466 ATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGC 19501 >seq1416 Length=13108 Score = 127 bits (140), Expect = 5e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || |||||||| || |||||||| || ||||| ||||| || ||||||||||| Sbjct 9289 CCGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCC 9348 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||||||||||| || ||||| ||| ||| || || || || Sbjct 9349 TTGTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTG 9408 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGT 195147 | ||||| || |||||||| || || || | ||||||| |||| Sbjct 9409 ATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCATTGTTGGT 9453 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| ||||| |||| || || | ||||| || Sbjct 8080 ACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTCC 8139 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || ||||| || || || ||||| || || |||||||| Sbjct 8140 AACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGG 8199 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||| || ||||| || |||||||| || || | |||||| Sbjct 8200 ATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTG 8259 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 8260 CCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 120 bits (132), Expect = 7e-22 Identities = 155/216 (72%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||| || ||||| || ||||| |||| ||||| | || || ||| Sbjct 8536 ACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCG 8595 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || |||||||| || ||||| ||||| || || || || || ||||| || Sbjct 8596 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGG 8655 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAA-------C 195104 || || ||| || ||||| ||||||||||| ||| || || ||||| | Sbjct 8656 ATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNNNNNN 8715 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || | ||||| ||||| | |||||| Sbjct 8716 NNTTTTTCCCGTGAGCGTTTTGACGAAGATTTGCAT 8751 Score = 100 bits (110), Expect = 6e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || |||||||| || ||||| ||||| || || || || || Sbjct 8912 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCC 8971 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || |||||| ||||| |||||||| ||| || || || | || Sbjct 8972 TTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAACGTG 9031 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || ||||| | |||||| Sbjct 9032 ATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 >seq986 Length=59218 Score = 127 bits (140), Expect = 5e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || ||||||||||| || || ||||| || ||||| ||||| Sbjct 6329 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCC 6270 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||||||||| ||||||||||| ||| ||||| || ||||| Sbjct 6269 TTGTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTG 6210 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || ||||| | |||||| Sbjct 6209 ATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCAT 6172 >seq1169 Length=14909 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| | |||||||| || |||| ||||| || |||||||| || Sbjct 5702 CCGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATGCCCTCC 5643 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || ||||||||||| |||||||| || ||||| |||||||| Sbjct 5642 TTGTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 5583 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | |||||| Sbjct 5582 ATTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCAT 5545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109454392044038