Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1416 107 1e-18 >seq1416 Length=13108 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || || | || |||| |||| ||| || || ||||| Sbjct 8098 TCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAACTGCTTCCCCGCAAAG 8157 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||| || | || | ||||||||||| |||||| ||||||| Sbjct 8158 ATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGGATCTTCGTTTTGACGTTC 8217 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || || || || || ||||| ||||||||| Sbjct 8218 TCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACA 8277 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 8278 AAGATTTGCATA 8289 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || | || || || ||||| ||||| || Sbjct 8325 TTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAA 8384 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | || |||||||| |||||| || ||| Sbjct 8385 GATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTT 8444 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || || ||| || || | ||| || || || |||||||| || || || Sbjct 8445 TTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGAC 8504 Query 34970 AAAGATCTGCATA 34982 ||||| |||||| Sbjct 8505 GAAGATTTGCATA 8517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626027312592