Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq972 102 9e-17 >seq972 Length=266462 Score = 102 bits (112), Expect = 9e-17 Identities = 322/497 (65%), Gaps = 4/497 (1%) Strand=Plus/Minus Query 48308 ATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTG 48367 ||| |||||||| || || ||||| || || | |||| || || ||||| || || || Sbjct 234416 ATCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTCCCACCCTG 234357 Query 48368 ATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATAT 48427 || | ||| | ||||||||||| || || || ||||| || ||||| || || || Sbjct 234356 GTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCGTTGGAGTA 234297 Query 48428 ACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA--CTAATTGAAATACCT 48485 || || || || | ||| || ||| ||| | || ||| | ||| |||||| Sbjct 234296 CCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATT--AATACCG 234239 Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545 ||||| || || |||| || || | || || ||| || || || ||||| || || Sbjct 234238 ATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATGCCGTCG 234179 Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCT 48605 || || || |||| | | | ||||| || | |||||| ||| || || Sbjct 234178 ATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGGGTGCCG 234119 Query 48606 GAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTT 48665 | ||| || | || || ||||| || | || | || || || | | || |||||| Sbjct 234118 GCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCGTATGTT 234059 Query 48666 TCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATAT 48725 || || | | ||||| || ||| ||||| | || |||||||| | ||| | Sbjct 234058 TCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAGCATGTGC 233999 Query 48726 TGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTA 48785 ||||| ||||| | || ||||| || || | || || || ||| | || || Sbjct 233998 TGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGTTCGAGGGTCTTG 233939 Query 48786 AAACCAAAATAGTTGTA 48802 || || || |||||||| Sbjct 233938 AAGCCGAAGTAGTTGTA 233922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095351546960