Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq999 89.7 4e-13 seq1416 86.0 5e-12 >seq999 Length=50871 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| ||||| || ||||| |||| || ||| | | | || || | ||| Sbjct 17956 TGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTCCTCGAGTTGT 18015 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||| || || || || |||||||||||||| | || ||||| Sbjct 18016 TTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTTCTGGATTTTC 18075 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || |||| | ||||| || || |||| ||||| || || || || || Sbjct 18076 GTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATCTCAAG---GATTGTCTTTCCCGTG 18132 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || || || Sbjct 18133 AGCGTTTTGACGAAGATTTGTAT 18155 >seq1416 Length=13108 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||||| || || || || | ||| || || || || ||||||||||| || || ||||| Sbjct 9301 TGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATC 9360 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || ||| || | || | ||||| || | ||| || || || |||| || |||||| Sbjct 9361 TTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTGATGGTCTTGCCG 9420 Query 101444 GTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || ||||| || ||||| || ||||| ||| Sbjct 9421 GTCAAAGTCTTCACAAAGATTTGCATTGTT 9450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396269156063298