Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq972 178 2e-39 seq1026 176 8e-39 >seq972 Length=266462 Score = 178 bits (196), Expect = 2e-39 Identities = 351/521 (67%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 212910 TTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGC 212969 || || |||||||| ||||| | |||| || ||| | ||| || |||||||| Sbjct 235664 TTCACAATCTGGAATTCACCGCTCAATACCCGCCGGGTGTAGATGTTGGACGTGTAGGGT 235605 Query 212970 TCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACC 213029 |||| || |||||||| || || || || | ||| ||| || |||||||| || || Sbjct 235604 TCGAAGCATTCGTTGTTGCCTAGGATTTGCGAGGTGGAGGCGGTCGGCATGGGTGCGACG 235545 Query 213030 AGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCAT 213089 ||||| |||||| | ||||| | | |||| || || || || |||||||||||| Sbjct 235544 AGGAGGGAGTTCCTGATACCGTGTTTGGCGATTTGGGATCGGAGTTCGGCCCAGTCCCAT 235485 Query 213090 CTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTC 213149 | ||||| | ||| |||||||||||||| || | || || ||||| Sbjct 235484 C---------GGTCCGAGGTCTTGACGTTCCACATGTCTGGTTGGAGGACACCCTTGCTG 235434 Query 213150 ACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCC 213209 || ||||| |||| |||| || | || | || || |||| |||||| || || Sbjct 235433 ACAGGGCTTCCCTCATAAGTTTCATACGTCCCTTCCTTCTGAGCCAACTCGCAAGAAGCT 235374 Query 213210 TGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGG 213269 | |||||||| |||| || || ||| || || | |||||||| ||||||| | Sbjct 235373 TCAAGGGCAGCAAAGTACATCGTCTCACTGATGTCGCGGTTGAGCTGACGGGCCTCTTGC 235314 Query 213270 GACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCG 213329 || ||||||||| ||| ||| | || || || || ||||| || | ||| Sbjct 235313 GAATCGAAGGGCATGCGCATCTTAATGAAAGCGTCGGCAAGACCTTGGACGCCCAGACCG 235254 Query 213330 ATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCG 213389 ||||| | ||| | || ||| |||||| | || | ||||| ||||| ||| Sbjct 235253 ATGGGGCGGTGGCGCATGTTCGACTTGCGGGCTTCGGGGACCGGGTAGTAGTTGATGTCA 235194 Query 213390 ATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| ||||||||||| |||| | || |||||||| || Sbjct 235193 ATGATTTTGTTGAGGTTCTTGGTGACGACCTTGGTGACCTG 235153 >seq1026 Length=25707 Score = 176 bits (194), Expect = 8e-39 Identities = 350/515 (68%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || ||||| || | |||||||||||||| ||||| |||| ||| || || |||| Sbjct 12361 TGATACTCCCCGACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCAAGGAAATCAACTCC 12420 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 |||||| ||||| || | ||| || | | | |||| | || || Sbjct 12421 ATGAAGTCAAAGGGATTTTCGGCGTTGTAGTGCTTGGGGAATCCCAAGGCGACGAGGAGA 12480 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 | || |||||| |||||||||| |||||||| | ||||||||| ||||||| Sbjct 12481 CGGTCAGCGACGAACTCGATGTACCGGCACATGAGGACGGAGTTCATGCCGATGAGGGCA 12540 Query 48020 ACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGC 48079 ||||| | ||| | ||||| || || | || || ||| ||||| | || || Sbjct 12541 ACGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTGG 12600 Query 48080 TTAACGCGGGACTC-TGAG--GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 |||| | || |||| || || | | || || || |||| | ||| ||| Sbjct 12601 AGAACG---GTTTCATGAGCGGGCTTTTGGTTGAGTTGTGTGA---AGAGGAGGCAAGCA 12654 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 || || | ||| | ||||||||| ||| |||||| |||||||||| ||| || ||| Sbjct 12655 AAATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGC 12714 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | || | || || |||||||| || | || || ||||| ||||||||||| ||| Sbjct 12715 ATCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAGATACCC 12774 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || ||||| ||||| ||| ||| | ||| |||| | || ||||||| |||||| Sbjct 12775 TCAACTGCGGCGAAAGCGACGAGACGTTCTGCGAAGACGGAGTCCTTGTCTTCGATCCAT 12834 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| |||||||| |||||||| |||||| || Sbjct 12835 CGAAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 12869 Score = 89.7 bits (98), Expect = 1e-12 Identities = 173/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| ||| ||| | ||||| || |||||| || || |||||| | ||| || Sbjct 13003 GTACATTTCACTGTGAATGTTCTCAATCATGATCTGAAAGCCATAGAAGCAGCGGGCTTC 13062 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 | | ||| ||||| || ||| | ||| | || || || ||||| || || || || Sbjct 13063 AGGGATCTGGACTTCATTGCTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCAGA 13122 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 ||||| |||||||||||||| | | ||| | || |||| || ||||| || Sbjct 13123 CGCAGCGAAGAAGGCAAGGACGCGGGAGATGAAGTAACGTTCGTCGTCATTGAGACGGTT 13182 Query 48604 ---CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | | ||| ||| ||||| |||||||| |||||||||| || || Sbjct 13183 TTCCCAGTCGACCAGGTCCTTGGAAAGGTCGACTTCTTCAGCAGTCCAGAAAGAAGCTTC 13242 Query 48661 TGCTTTTTTGTACAT 48675 || ||||||||||| Sbjct 13243 GGCCTTTTTGTACAT 13257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931510513077760