Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1026 152 1e-31 seq972 84.2 4e-11 >seq1026 Length=25707 Score = 152 bits (168), Expect = 1e-31 Identities = 307/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCC 25935 || || || || || || || || || ||||| ||||| ||| ||| || ||||| || Sbjct 12803 GAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTTGCTTCC 12744 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCAT 25994 ||||||||||| ||| || || | |||||||| || ||||| |||||||| ||||| Sbjct 12743 ATCTTCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCT-CACTTTCTCCAACGAACTCAT 12685 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT 26054 | | | ||||| || |||||| | |||||||| ||||| |||| ||| || | Sbjct 12684 CTCCCGTGACGAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTTCAC---ACAACTCAA 12628 Query 26055 CCACAAACCTTCTCAAGAGACCG-TCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 ||| || || |||| || |||| ||| || ||||||| || || |||| ||||| Sbjct 12627 CCAAAAGCCCGCTCATGAAACCGTTCTCCA-AATCATCACCGAAGCGGTGGGCATCGAAC 12569 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 | || || | | ||||||||| | |||||| Sbjct 12568 AAGAATTCCTCACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCCGTCCTCATGT 12509 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACT 26231 ||| ||||| |||| || || |||| ||| || || ||| ||||| || ||| | Sbjct 12508 GCCGGTACATCGAGTTCGTCGCTGACCGTCTCCTCGTCGCC--TTGGGATTCCCCAAGCA 12451 Query 26232 CTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 ||||| ||||| || || || ||||| ||||| || || ||| | || |||||| Sbjct 12450 CTACA--ACGCCGAAAATCCCTTTGACTTCATGGAGTTGATTTCCTTGCAGGGCAAGACC 12393 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||||| |||| |||||| || |||||| Sbjct 12392 AACTTCTTTGAGAAGAAGGTCGGGGAGTATCAA 12360 >seq972 Length=266462 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 221406 CGCAAGACTGCGTCA-GGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTC 221464 ||||||| || ||| ||||||| ||| || |||||| ||| |||||| Sbjct 235384 CGCAAGAA-GCTTCAAGGGCAGCAAAGTACATCGTCTCACTGATGTCGCGGTTGAGCTGA 235326 Query 221465 TTGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTG 221523 |||||| | ||| ||||||||| |||| | | |||||| ||||||| || || || Sbjct 235325 CGGGCCTCTTGCGAATCGAAGGGCATGCGCATCTTAATGAAAG-CGTCGGCAAGACCTTG 235267 Query 221524 TACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGA 221581 || || | ||||||||| | ||| | | |||| || |||| ||||| || || || Sbjct 235266 GACGCCCAGACCGATGGGGCGGTGGCGCATGTTCGACTTGCGG--GCTTCGGGGACCGGG 235209 Query 221582 TAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTT 221628 || |||||| ||| || | |||||||||||| |||| ||| || Sbjct 235208 TAGTAGTTGATGTCAATGATTTTGTTGAGGTTCTTGGTGACGACCTT 235162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928822577388160