Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq986 89.7 3e-12 seq1416 87.8 1e-11 >seq986 Length=59218 Score = 89.7 bits (98), Expect = 3e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || || || |||||||| || || ||||| ||||||||||||||| Sbjct 6326 TCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTG 6267 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| ||||| ||||| || || | | | | || ||||| || Sbjct 6266 TCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCA-CCTCGAGGGTGAT 6208 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||||||||| ||||| Sbjct 6207 AGTCTTGCCCGTAAGGGTCTTAACGAAGATTTG 6175 >seq1416 Length=13108 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| || ||||| || |||||||| |||||||| ||||| || ||||||||||| ||| Sbjct 8143 TGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGGATC 8202 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCG 480746 || |||||| || ||||| || | | ||| || || || || || ||| Sbjct 8203 TTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTGCCG 8262 Query 480747 GTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| || || ||||| Sbjct 8263 GTGAGGGTCTTCACAAAGATTTG 8285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268097099253272