Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1026 116 4e-21 seq972 93.3 5e-14 >seq1026 Length=25707 Score = 116 bits (128), Expect = 4e-21 Identities = 335/501 (67%), Gaps = 12/501 (2%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| | |||| | || |||| | ||| || ||||| || || Sbjct 12857 AAGAAGGCCGACTGGGCTCTTCGATGGATCGAAGACAAGGACTCCGTC-TTCGCAGAACG 12799 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTT 65140 || | || || || || |||||||||||||||||||| || || ||| | || | Sbjct 12798 TCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTT-TGCTTCCATCT 12740 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| |||||||||| || | ||||| ||||| ||||| || ||||| || |||| Sbjct 12739 TCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGAACTCATCTCCC 12680 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCA-AGACTTTGCGTAATAGA 65259 | || || || |||||| || ||||| ||||||| | | | || || Sbjct 12679 GTGACGAAGGCCTCCACTGCGATTTTGCTTGCCTCCTCTTCACACAACTCAACCAAAAG- 12621 Query 65260 CCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTC 65319 ||| || ||||| | | | ||| | | || ||||| | || || ||| ||| Sbjct 12620 CCCGCTCATGAAACCGTTCTCCAAATCATCACCGAAGCGGTGGGCATCGAACAAGAATTC 12561 Query 65320 ATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTAC 65379 || ||||| ||||| | |||||||| |||||||| | |||| | |||| Sbjct 12560 CTCACCGACGCTCTCCCCGTTGCCCTCATCGGCATGAACTCCGTCCTCATGTGCCGGTAC 12501 Query 65380 ATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCA--TTTGGAACG 65437 || |||| || | || ||||||||| | ||||| | || || | | |||| Sbjct 12500 ATCGAGTTCGTCGCTGACCGTCTCCTC-GTCGCCTTGGGATTCC-CCAAGCACTACAACG 12443 Query 65438 CGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTG-ATGGGAAGACCAACTTCTTT 65496 | | ||||| |||||||| ||||| ||| ||||| | || ||||||||||||||| Sbjct 12442 CCGAAAATCCCTTTGACTTCATGGAGTTGATT-TCCTTGCAGGGCAAGACCAACTTCTTT 12384 Query 65497 GAGAAGCGAGTTGGGGACTAT 65517 |||||| || ||||| ||| Sbjct 12383 GAGAAGAAGGTCGGGGAGTAT 12363 >seq972 Length=266462 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 |||| || ||| ||||| ||||||| || || |||| || || || || ||| | ||| Sbjct 233988 GAAAGGCCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCATGGTGACGACGTAGAT 234047 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAAC 75324 | | | | || |||||||| |||||| || ||| |||| |||||| |||| || Sbjct 234048 GCCGCCATCGAAACATACGAACTCATGTCCGAAAAGTAC-TTCACCCACGCATCACCCAC 234106 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 |||||||||||| || || || ||||| | ||| || ||| | || | | || Sbjct 234107 CCTCTTCAATGCCGGCACCCCTCACCCGCAACTCTCCTCCTGTTTCTTGCTCACGATGAA 234166 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCT 75417 ||| ||||| ||| |||| || || | |||||| Sbjct 234167 GGACGACTCCATCGACGGCATTTACGAAACTCT 234199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555327072320