Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1416 197 2e-45 seq986 158 2e-33 seq1169 136 5e-27 seq1600 131 2e-25 seq999 125 9e-24 seq723 89.7 7e-13 seq274 87.8 2e-12 >seq1416 Length=13108 Score = 197 bits (218), Expect = 2e-45 Identities = 183/232 (79%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||||||||||||||| ||||| || || || || ||||| ||||| || |||| Sbjct 8293 GTGGTATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAGT 8234 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| ||||| | ||||| ||||| ||||| || ||||| || | Sbjct 8233 CCTCCGACACTATCGAGAACGTCAAAACGAAGATCCAAGACAAGGAGGGTATTCCCCCTG 8174 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 |||||||||| || || ||||| || || ||| | || ||||| ||||| ||| | || | Sbjct 8173 ATCAGCAACGTCTCATCTTTGCGGGGAAGCAGTTGGAGGATGGTCGTACGCTCTCCGACT 8114 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| |||| |||||||| || || ||||| || || | || || ||||| Sbjct 8113 ACAACATTCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGTCTCCGTGGTGG 8062 Score = 176 bits (194), Expect = 6e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||| || |||||||| || || || || |||||||| ||||| ||||| | Sbjct 8518 GTATGCAAATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCT 8459 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| | || | ||||| || || |||||||| || || ||||| | Sbjct 8458 CCGACACGATCGAAAACGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCCGACC 8399 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 ||||||| || || || || || ||||| |||||||| || || |||||| | || |||| Sbjct 8398 AGCAACGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGCCGCACCCTCTCCGACTACA 8339 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | || ||||| || || || || || || || | || || |||||| Sbjct 8338 ACATCCAGAAGGAATCCACCCTCCATCTCGTCCTCCGTCTCCGTGGTGGT 8289 Score = 161 bits (178), Expect = 1e-34 Identities = 139/172 (81%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||||||||| || | || || || || ||||| |||||||| || || || Sbjct 9446 ATGCAAATCTTTGTGAAGACTTTGACCGGCAAGACCATCACGCTCGAGGTCGAATCTTCC 9387 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| ||||| |||||||||| || |||||||||||||| || || ||| Sbjct 9386 GACACGATCGAGAACGTCAAAACCAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 9327 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTG 172033 ||||| || || || || || || |||||||| || || ||||||||| ||| Sbjct 9326 CAACGTCTCATCTTCGCCGGGAAGCAGCTTGAGGACGGTCGTACCCTCTCTG 9275 Score = 143 bits (158), Expect = 4e-29 Identities = 173/237 (73%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAA-------CTATCACCCTCGAGGTT 171912 ||||||||||||| || ||||| || || ||||||| ||||||| ||||| Sbjct 8753 GTATGCAAATCTTCGTCAAAACGCTCACGGGAAAAANNNNNNNNNNTCACCCTGGAGGTC 8694 Query 171913 GAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCA 171972 || ||||| ||||| ||||| || | || | ||||| || || ||||| || || || Sbjct 8693 GAATCGTCGGACACCATCGAGAATGTGAAGACGAAGATCCAGGACAAGGAGGGTATCCCG 8634 Query 171973 CCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCT 172032 ||||| |||||||| || || || || || ||||| || || || || || || ||| | Sbjct 8633 CCCGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCC 8574 Query 172033 GATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || |||||| | |||||||| || || || ||||| || || | ||||| || ||| Sbjct 8573 GACTACAACATCCAAAAGGAATCCACCCTTCACCTCGTCCTCCGTCTTCGCGGCGGT 8517 Score = 134 bits (148), Expect = 2e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||| ||||||||||| || || ||||| | ||||| ||||| || Sbjct 9069 ATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTCC 9010 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| |||||||||| || ||||| || || || ||||| ||| Sbjct 9009 GACACCATCGAGAATGTCAAGACCAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 8950 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTAC 172025 ||||| || || || || || || ||||| || || || || || Sbjct 8949 CAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCAC 8906 >seq986 Length=59218 Score = 158 bits (174), Expect = 2e-33 Identities = 138/172 (80%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || |||||||| || || ||||||||||||||||| ||||| || Sbjct 6172 ATGCAAATCTTCGTTAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCC 6231 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||||| || |||||||| ||||| || || ||| Sbjct 6232 GACACCATTGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAG 6291 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTG 172033 || || ||||| || || || || ||||| || || || || |||||| ||| Sbjct 6292 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCTG 6343 >seq1169 Length=14909 Score = 136 bits (150), Expect = 5e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || ||||| || || || || || |||||||| ||||| |||||||| Sbjct 5545 ATGCAAATCTTCGTCAAAACGCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCGTCC 5604 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| ||||| | ||||| ||||| ||||| |||||||| || || ||| Sbjct 5605 GACACCATCGAGAACGTCAAAACGAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCAG 5664 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACC 172026 |||| || || || || | || ||||| || || || || ||| Sbjct 5665 CAACATCTCATCTTCGCCAGCAAGCAGCTCGAGGACGGTCGCACC 5709 >seq1600 Length=33002 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 ||||| || || ||||||||||| ||||| || || ||| | || |||||||||||||| Sbjct 29255 TGTGTGGGAGTGTGGCAAAATGACCGTGTCGAAATCATCGCCAACGACCAAGGAAACCGC 29314 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || || || || || | || | || |||||| |||| ||||||||||| Sbjct 29315 ACCACCCCCTCATATGTCGCTTTCTCCGACACCGAGCGTCTCATTGGTGATGCCGCAAAG 29374 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGC 195511 || || || |||||||| | ||| || ||||| ||||| |||||| | || ||||| Sbjct 29375 AACCAAGTCGCCATGAACCCCACCAACACCGTCTTCGACGCTAAGCGTTTGATCGGTCGT 29434 Query 195512 AAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553 || | ||| | |||||| ||| || ||| ||||| Sbjct 29435 CGTTTCGCTGATGCTGAGGTCCAATCCGACATGAAGCACTGG 29476 >seq999 Length=50871 Score = 125 bits (138), Expect = 9e-24 Identities = 166/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||| |||||||| || ||||| || || ||||| || ||| || ||| | ||| | | Sbjct 18157 GTATACAAATCTTCGTCAAAACGCTCACGGGAAAGACAATC---CTTGAGATGGAGACCT 18101 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| | || | || || || | || ||||||||||| || || | Sbjct 18100 CCGACACGATCGAAAACGTGAAGACGAAAATCCAGAACAAAGAAGGCATTCCCCCTGACC 18041 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 ||||||| || || || || || ||||| || || || | || || ||| | || |||| Sbjct 18040 AGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGACCGCACTCTCTCCGACTACA 17981 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | |||||||| || || || ||||| || || | | || |||||| Sbjct 17980 ACATCCAAAAGGAATCCACCCTTCACCTCGTCCTCCGTTTCCGTGGTGGT 17931 Score = 125 bits (138), Expect = 9e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 171864 GCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGA 171923 ||||||||| ||||| ||||||||||| || || ||||| | ||||| ||||| || || Sbjct 19501 GCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTCCGA 19442 Query 171924 CACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCA 171983 ||| ||||| || |||| |||||||||| || || || || || || ||||| ||||| Sbjct 19441 CACCATCGAGAATGTCAAGACCAAGATTCAGGACAACGAGGGTATCCCTCCCGACCAGCA 19382 Query 171984 ACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTAC 172025 ||| || || || || || || ||||| || || || || || Sbjct 19381 ACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCAC 19340 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||||||||| || ||||| || || || |||||||||||||| |||| || ||||| Sbjct 19198 TATGCAAATCTTCGTCAAAACGCTCACAGGGAAAACTATCACCCTGGAGGCCGAATCGTC 19139 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| ||||| || | || | ||||| || | ||||| || || || ||||| || Sbjct 19138 GGACACCATCGAGAATGTGAAGACGAAGATCCAGGGCAAGGAGGGTATCCCGCCCGACCA 19079 >seq723 Length=162465 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 ||||| || ||||| || || |||| | ||||| || ||||||||||| ||| | Sbjct 162313 ATTGGGATTGATTTTGGGACGGGGTACTTAACAGTTGGAGTGTGGCAAAATGACCGTTTT 162372 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || || ||| | || ||||| |||||||| || || || || || || || || | || Sbjct 162373 GAAATCATCGCCAACGACCAGGGAAACCGCACCACCCCCTCATATGTCGCTTTCTCCGAC 162432 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAA 195453 | || |||||| |||| ||||||||||| || Sbjct 162433 ACCGAGCGTCTCATTGGTGATGCCGCAAAGAA 162464 >seq274 Length=174143 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 ||||||||||| | |||| | | || || || ||| | || |||||||| |||||| Sbjct 153934 TGTGTTGGTGTCTACAAAAACGGTAACGTCGAAATCATCGCCAACGACCAAGGTAACCGT 153993 Query 195392 ACAACTCCATCGTACGTTGCCTTTAC---AGATAATGAACGTCTCGTTGGAGATGCCGCA 195448 | || || || ||||| ||||| || |||| || |||||||| || || ||||| Sbjct 153994 ATTACCCCCTCCTACGTCGCCTTCACCGAAGATGGCGAGCGTCTCGTCGGTGACGCCGCC 154053 Query 195449 AAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGT 195508 || || ||| | || | |||||| || || |||| ||||| ||||| |||||| Sbjct 154054 AAGAACCAGGCCGCCACCAACCCTGAGAACACCATCTTCGACGCCAAGCG----ATTGGT 154109 Query 195509 CG 195510 || Sbjct 154110 CG 154111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657846660642080