Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1785 91.5 4e-13 seq1650 86.0 2e-11 seq1821 84.2 6e-11 >seq1785 Length=38701 Score = 91.5 bits (100), Expect = 4e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 353915 GACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAG 353974 |||| || |||| |||| || ||||||| | | | ||| || || || |||| Sbjct 962 GACCGGCCTCAACGTTCCATTGCTCAGGGCAGATGGTACCAGTGAACTCGCGGTGGTGAG 1021 Query 353975 ATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGT 354034 | || || | ||||| ||| ||| || || || ||| || ||||| || |||| Sbjct 1022 AAATGATGACGACACCACCACCATATTCCTGGATGGCGCCGGCAAGGGCACCGAGGGAGT 1081 Query 354035 CACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTG 354094 ||||||||||| | || || |||||||| |||| || | ||| || | ||||||| | Sbjct 1082 CACGGTCGAGGTAGTTGGTGGGTTCGTCGAGGACGAGCATGTGGGGGTTGTTCCACATGG 1141 Query 354095 CTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | ||| | || || ||||| ||||| || || || || || Sbjct 1142 CGGCACCGAGGACGACCTTGACCTTTTGACCTCCGGAGAG 1181 >seq1650 Length=9979 Score = 86.0 bits (94), Expect = 2e-11 Identities = 175/259 (68%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 302565 CATA-ATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTT 302623 |||| ||||| ||||| ||||| | |||||||| | || ||| | || | |||| Sbjct 2254 CATACATGTCCTCCATTGATTTGATCAGTCGACGCTGGACGTACCCACTGGTGGCGGTTT 2313 Query 302624 TTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG 302683 ||||||| || || || || || | | || |||||||| ||||| || ||||||| | Sbjct 2314 TTACAGCCGTGTCGATGAGTCCTTCCCTGCCCCCCATAGCGTGGAAAAAAAGCTCTTGAG 2373 Query 302684 GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 | || || | || || ||| ||| || || || | || | | |||||||||| Sbjct 2374 GGGTGAGGCCACGGATGAACGAGTTCTTCACAAAGCCGCCAGCGACAGCTGAATCGTCGA 2433 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 || | | | ||||| || ||||||| || | || | ||| || || || |||| | Sbjct 2434 ACCGGCTGTAATGTGGGAGAGTCCTGTCCTTGAATCCTTTTGGAATGCGGTTGCCATTCA 2493 Query 302804 CGTTCTGCTGTCCCAGGCA 302822 | |||| || || || || Sbjct 2494 CTATCTGTTGCCCTAGACA 2512 >seq1821 Length=48319 Score = 84.2 bits (92), Expect = 6e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| || ||||||||||||||||||||||||||||| || |||||||||||||| || Sbjct 13612 GCACCATGGGAAATCATACAATCACGCTCCATTTCACCAAACCGAAGACCACCATCACG 13554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471781506433018