Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1026 141 1e-27 seq163 95.1 1e-13 seq1179 93.3 5e-13 seq624 91.5 2e-12 seq184 87.8 2e-11 >seq1026 Length=25707 Score = 141 bits (156), Expect = 1e-27 Identities = 211/293 (72%), Gaps = 16/293 (5%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGG---TT 868773 ||| || |||||||||||||||| | || ||||||||||| | | || ||| || Sbjct 12381 CTCAAAGAAGTTGGTCTTGCCCTGCAAGGAAATCAACTCCATGAA-GTCAAAGGGATTTT 12439 Query 868774 GGGCGTCTTGTAGTGCTTTTCGCATCCGA--GCGACGCGAGCAGGCGGTCGGCGACAAAC 868831 ||||| |||||||||| | |||| | |||| |||| || ||||| ||||| ||| Sbjct 12440 CGGCGT--TGTAGTGCTTGGGGAATCCCAAGGCGA--CGAGGAGACGGTCAGCGACGAAC 12495 Query 868832 TCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCG 868891 ||||||||| ||||||||||| ||| ||||||||||||||| || || || || | ||| Sbjct 12496 TCGATGTACCGGCACATGAGGACGGAGTTCATGCCGATGAGGGCAACGGGGAGAGCGTCG 12555 Query 868892 CTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGGGCACG---TCG 868948 | | || |||| ||||| | || || ||| |||||| || | | ||| || Sbjct 12556 GTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTG---GAGAACGGTTTCA 12612 Query 868949 GCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTG 869001 | |||||| | | ||| ||| |||| ||||| ||||| |||||||| Sbjct 12613 TGAGCGGGCTTTTGGTTGAGTTGTGTGAAGAGGAGGCAAGCAAAATCGCAGTG 12665 Score = 96.9 bits (106), Expect = 4e-14 Identities = 141/195 (72%), Gaps = 11/195 (6%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||| | ||||||| || | |||||||||||| | ||| |||||| Sbjct 12670 CCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCATGCCTCGCTTC 12729 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || ||||| ||||||| ||| || ||| ||||| ||||| ||||| || ||||| || Sbjct 12730 TTCAGCCAGAAGATGGAAGCA-AAGGAGCCGGAGAAGAAGATACCCTCAACTGCGGCGAA 12788 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCGC 869355 ||| ||| || || || ||| | ||| |||||| | |||||| | || Sbjct 12789 AGCGACGAGACGTTCTGCGAAGACG--GAG----TCCTTGTCTTCGATCCATCGAAGAGC 12842 Query 869356 CCAGTCGGCCTTTTT 869370 |||||||||||| || Sbjct 12843 CCAGTCGGCCTTCTT 12857 Score = 89.7 bits (98), Expect = 6e-12 Identities = 174/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| |||||||| || |||||| ||||| || ||| | | || | | ||||| Sbjct 13015 GTGAATGTTCTCAATCATGATCTGAAAGCCATAGAAGCAGCGGGCTTCAGGGATCTGGAC 13074 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 || || |||| || || | ||||| ||| ||||| ||||| || ||||| || Sbjct 13075 TTCATTGCTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCAGACGCAGCGAAGAA 13134 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CGACA--CCCAGTGGAC 869811 || |||||| | ||| |||| || |||||||| |||| || |||||| ||| Sbjct 13135 GGCAAGGACGCGGGAGATGAAGTAACGTTCGTCGTCATTGAGACGGTTTTCCCAGTCGAC 13194 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | ||||| || || || || ||||||| || || |||||||||||||| Sbjct 13195 CAGGTCCTTGGAAAGGTCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCCTTTTTGTA 13254 Query 869872 CATCTCCCATACTTG 869886 ||| | ||| || || Sbjct 13255 CATTTGCCAGACCTG 13269 >seq163 Length=10349 Score = 95.1 bits (104), Expect = 1e-13 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 509107 GATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACAT 509166 ||| |||||| | ||||| ||| ||||||| ||||||||||| ||||||||||| ||||| Sbjct 10337 GATGGGCGGGAGGGAGGGTCTCATCGACACTGCCGTCAAGACCGCCGAGACGGGTTACAT 10278 Query 509167 CCAGCGCCGGTGCATCAAGTCGATGGA 509193 ||||| ||| ||||||| || |||| Sbjct 10277 ACAGCGACGGATCATCAAGGCGGTGGA 10251 >seq1179 Length=17505 Score = 93.3 bits (102), Expect = 5e-13 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 18247 GTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTT 18306 |||| ||||| || ||||| ||||| ||| ||| || ||| | || ||| | | Sbjct 12488 GTCACCATCCTCTCCGGCACCGAGAAAGGCTACACCCTTGGCACTCCTCTCGCCATGAAC 12429 Query 18307 GTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCC 18366 || |||||| ||||| || ||| |||||| || ||| | | || || ||| Sbjct 12428 GTCCCCAACCAAGACCAACGCCCCCACGACTACGGAGAAATGGACTACTACCCACGCCCC 12369 Query 18367 TCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGC 18426 || |||||||||| |||||| | || ||||||||||| || ||||| || Sbjct 12368 TCCCACGCCGACTTTACCTACCTCCAAAAATACGGCATCAAAGCCAGCAGCGGCGGCGGA 12309 Query 18427 CGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 || || |||||||||||||| || || || || |||| |||||||| ||||| Sbjct 12308 CGTTCCTCTGCCCGCGAGACGATCGGCCGTGTGGCTGCCGCAGCGGTCGCGGAGAA 12253 >seq624 Length=286379 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1254450 ATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATG 1254509 ||||| |||| ||||||||||| || |||||||||| ||||| | ||||||||| || Sbjct 59107 ATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGGACATGGCCTTGTTGGAAATA 59166 Query 1254510 CCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 || ||||||||| || || || || || ||||||||| | | ||||| Sbjct 59167 CCAGTGTCGGGGTGGACTTGTTTCAGGACTTTGTAGATGTAGGTGGAGTA 59216 >seq184 Length=11198 Score = 87.8 bits (96), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 |||||||| | ||||||||||| || ||||| || |||||||| ||||| ||| | ||| Sbjct 10976 CTCTTTGAAATCATCCTCGCCGCAAATTACCTTGATATCAAGCCCCTGCTGGATTTGGGG 10917 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAG 1592260 |||||| | || || || ||||| ||||| ||| Sbjct 10916 TGCAAGACCGTCGCGAATATGATTAAGGGGAAG 10884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106982128196738