Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1416 134 1e-26 seq972 107 2e-18 seq999 89.7 5e-13 seq1169 86.0 6e-12 >seq1416 Length=13108 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || ||||| || || || || |||||||| || || || Sbjct 8288 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAGTCCTCC 8229 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||||| || |||||||||||| || || || || || ||||| Sbjct 8228 GACACTATCGAGAACGTCAAAACGAA-GATCCAAGACAAGGAGGGTATTCCCCCTGATCA 8170 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | |||||||| ||||| ||| |||||||| | | | || || || || Sbjct 8169 GCAACGTCTCATCTTTGCGGGGAAGCAGTTGGAGGATGGTCGTACGCTCTCCGACTACAA 8110 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||| ||||| ||||| || ||| | ||| Sbjct 8109 CATTCAGAAGGAGTCGACCCTCCACCTCGTG 8079 >seq972 Length=266462 Score = 107 bits (118), Expect = 2e-18 Identities = 366/560 (65%), Gaps = 14/560 (3%) Strand=Plus/Minus Query 138431 CCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTA 138490 ||||||| || || || |||| | ||| | ||| |||||||| |||| || || | Sbjct 235735 CCGCAATAATCCGGTTCTTCATCTTATCATCCCACAAATTCAACTCCGTCAAATCTTTCA 235676 Query 138491 TCAGATATCTGTTT-ATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTG 138549 || || ||| || | | ||| ||||||||| |||||| || || ||| |||||| Sbjct 235675 ACAAATG-CTGATTCACAATCTGGAATTCACCGCTCAATACCCGCCGGGTGTAGATGTTG 235617 Query 138550 TTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGC 138609 ||| | || || || |||||||||| || || || || | |||| ||||||||| Sbjct 235616 GACGTGTAGGGTTCGAAGCATTCGTTGTTGCCTAGGATTTGCGAGGTGGAGGCGGTCGGC 235557 Query 138610 ATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGAC 138669 ||| || || | || || |||| | |||||| |||| | ||| Sbjct 235556 ATGGGTGCGACGAGGAGGGAGTTCCTGATACCGTGTTTGGCGATTTGGGATCGGAGTTCG 235497 Query 138670 GACCAGTCCCACAAATCGCTAGGT-TTTTTGTTCCACATATCGTACTGTAACATTCCCAA 138728 | ||||||||| || | |||| || ||||||||| || || | | ||| Sbjct 235496 GCCCAGTCCCATCGGTC-CGAGGTCTTGACGTTCCACATGTCTGGTTGGAGGACACCCTT 235438 Query 138729 ACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCT 138788 || | || || || || || | || || || || || ||||||||| Sbjct 235437 GCTGACAGGGCTTCCCTCATAAGTTTCATACGTCCCTTCCTTCTGAGCCAACTCGCAAGA 235378 Query 138789 CGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTC 138848 || || || ||| || |||| || || || || | | |||||| |||||||| Sbjct 235377 AGCTTCAAGGGCAGCAAAGTACATCGTCTCACTGATGTCGCGGTTGAGCTGACGGGCCTC 235318 Query 138849 -GGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCA 138907 ||| ||| | |||||||| | | | |||| |||||||| || ||||| ||||||| Sbjct 235317 TTGCG-AATCGAAGGGCATGCGCATCTTAATGAAAGCGTCGGCAAGACCTTGGACGCCCA 235259 Query 138908 CTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGC-GGCTTC---GATAGGATAATAG 138963 |||| ||||| ||||||| || ||| |||| |||||| || || || ||| Sbjct 235258 GACCGATGGGGCGGTGGCGCATGTTCGAC----TTGCGGGCTTCGGGGACCGGGTAGTAG 235203 Query 138964 TTTACATCGATGATTTTGTT 138983 || | || ||||||||||| Sbjct 235202 TTGATGTCAATGATTTTGTT 235183 Score = 93.3 bits (102), Expect = 4e-14 Identities = 334/517 (65%), Gaps = 9/517 (2%) Strand=Plus/Minus Query 139497 ATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG-- 139554 |||||| || || || ||||| || |||| ||| || || | || || ||| || Sbjct 234425 ATCAAAGACATCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATT 234366 Query 139555 -CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACC 139613 ||||| || || || | || ||| ||| ||| |||| | |||||| ||| | | || Sbjct 234365 CCCACCCTGGTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCC 234306 Query 139614 GCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGA-GCTCGGACGTCATGTACAT 139672 | | | ||||| |||| | ||| || | | | || || | | ||| |||| Sbjct 234305 GTTGGAGTACCCGTTCGTGCCAGCAATGT-ACGATCCCAAAGCGCGAATCTTATGCACAT 234247 Query 139673 TGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATA 139732 | || ||||| ||||| | |||||| || | ||||| | || ||||| | Sbjct 234246 TAATACCGATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAA 234187 Query 139733 TACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTT 139792 | || ||| |||||||| |||||||| || || || || || |||||||| | Sbjct 234186 TGCCGTCGATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAG 234127 Query 139793 TCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATT 139852 |||||||| || || || || ||||| ||||| | || ||||| | || Sbjct 234126 GGGTGCCGGCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTT 234067 Query 139853 CGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCA 139912 |||| |||||||||||| | | || || || |||||||||| || ||||| | Sbjct 234066 CGTATGTTTCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGA 234007 Query 139913 GCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTC 139970 |||| || || || ||| || | | | | ||| || || | ||| || Sbjct 234006 GCATGTGCTGAGGCCTTTCTGCGATCTTGTTGTTGATGCGGAGGAGGTAGGAGCGT--TC 233949 Query 139971 TAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 ||||||||| |||| ||||| | |||||||| ||| Sbjct 233948 GAGGGTCTTGAAGCCGAAGTAGTTGTAGTTGAAGTCG 233912 >seq999 Length=50871 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || || ||||| | |||||||| || || || || || || || | || || || Sbjct 18155 ATACAAATCTTCGTCAAAACGCTCACGGGAAAGACAATC---CTTGAGATGGAGACCTCC 18099 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || || ||| ||||| |||||||||| || || || || || Sbjct 18098 GACACGATCGAAAACGTGAAGACGAAA-ATCCAGAACAAAGAAGGCATTCCCCCTGACCA 18040 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGA--GAAACATGTCAGATTAT 24880 |||||| | ||||| ||||| ||||| || ||||| ||| | | | || || || Sbjct 18039 GCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGA--CGACCGCACTCTCTCCGACTAC 17982 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||||||||| || || ||| | || | || || || || || Sbjct 17981 AACATCCAAAAGGAATCCACCCTTCACCTCGTCCTCCGTTTCCGTGGTGG 17932 >seq1169 Length=14909 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||||| || || || || || || || || || || | || Sbjct 5545 ATGCAAATCTTCGTCAAAACGCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCGTCC 5604 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||||| || |||||||||||| || || || || || || || Sbjct 5605 GACACCATCGAGAACGTCAAAACGAA-GATCCAAGACAAGGAGGGCATTCCCCCTGACCA 5663 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 |||| | | ||||| ||| | || ||||| ||||| Sbjct 5664 GCAACATCTCATCTTCGCCAGCAAGCAGCTCGAGGA 5699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886836199920