Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq972 167 4e-35 seq1026 143 4e-28 seq624 107 3e-17 seq870 98.7 2e-14 seq184 96.9 5e-14 seq163 95.1 2e-13 >seq972 Length=266462 Score = 167 bits (184), Expect = 4e-35 Identities = 217/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| ||||| || | ||| | || | | ||||||||||| |||||||| Sbjct 234359 CTGGTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCGTTGGA 234300 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||| ||||| || | ||| | ||| | ||||| | ||| ||| | || || Sbjct 234299 GTACCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATTAATACC 234240 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| ||||| || | |||||||| | |||||| ||||||| || ||||| ||||| || Sbjct 234239 GATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATGCCGTC 234180 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| |||||| ||||||| | || || || || ||| ||||||| | | ||||| Sbjct 234179 GATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGGGTGCC 234120 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 |||||||||||| ||||| | || ||| | ||| || ||||||| ||||| || Sbjct 234119 GGCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCGTATGT 234060 >seq1026 Length=25707 Score = 143 bits (158), Expect = 4e-28 Identities = 236/334 (71%), Gaps = 16/334 (5%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| |||||| || || | ||| || |||||||||||||||| | Sbjct 12347 TGACGCCGGCCTTTTGATACTCCCCGACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCA 12406 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGG---TTGGCCGTCAGGTAGTGCTTCTCGCACC 794007 || ||||||||||| | | || ||| || | ||| ||||||||| | | | Sbjct 12407 AGGAAATCAACTCCATGAA-GTCAAAGGGATTTTCGGCGTT--GTAGTGCTTGGGGAATC 12463 Query 794008 CGA--GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGC 794065 | | |||||| || || ||||| |||||||| || |||||| ||||||||||| ||| Sbjct 12464 CCAAGGCGACG--AGGAGACGGTCAGCGACGAACTCGATGTACCGGCACATGAGGACGGA 12521 Query 794066 GTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGAC 794125 ||||||||||||||| || ||||| || | ||| ||| || |||| ||||| | || Sbjct 12522 GTTCATGCCGATGAGGGCAACGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCAC 12581 Query 794126 GGCCTCGATGATGATCTGCCTGGGCACG---TCGGACGACGGCTTGTCGACGAGCATCGT 794182 || ||| ||||||| || | | ||| || | ||||| | | ||| || Sbjct 12582 CGCTTCGGTGATGATTTG---GAGAACGGTTTCATGAGCGGGCTTTTGGTTGAGTTGTGT 12638 Query 794183 GTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 | |||| ||||| ||||| ||||| || || ||| Sbjct 12639 GAAGAGGAGGCAAGCAAAATCGCAGTGGAGGCCT 12672 Score = 98.7 bits (108), Expect = 2e-14 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||| || || | ||||| || || ||||||| || | ||||| || Sbjct 13049 AAGCAGCGGGCTTCAGGGATCTGGACTTCATTGCTGAAGCGCTCGACGAGGTTTTCGTTG 13108 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 ||||| ||||| || ||||| ||||| |||||| | ||| |||| ||| |||||| Sbjct 13109 ACGATACCGTCAGACGCAGCGAAGAAGGCAAGGACGCGGGAGATGAAGTAACGTTCGTCG 13168 Query 796261 TCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTC 796317 || |||| | |||||| |||| ||| | |||||||| || || || ||| Sbjct 13169 TCATTGAGACGGTTTTCCCAGTCGACCAGGTCCTTGGAAAGGTCGACTTCTTCAGCAGTC 13228 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCA 796352 || || || || ||||||||||||||||| | ||| Sbjct 13229 CAGAAAGAAGCTTCGGCCTTTTTGTACATTTGCCA 13263 Score = 91.5 bits (100), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||| | ||||||| || |||||||||||| | ||| |||||| Sbjct 12670 CCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCATGCCTCGCTTC 12729 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||||| | || ||| ||||| ||||| ||||| || ||||| || Sbjct 12730 TTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAGATACCCTCAACTGCGGCGAAA 12789 Query 794461 CCGACGAGCCGCTCGGCAAA 794480 ||||||| || || || || Sbjct 12790 GCGACGAGACGTTCTGCGAA 12809 >seq624 Length=286379 Score = 107 bits (118), Expect = 3e-17 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| || ||||||||| |||| ||||| ||| | | Sbjct 58887 GTACTTGGTGACAGCCTTGGTACCCTCAGACACGGCGTGCTTGGCGAGTTCTCCGGGAAG 58946 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584 ||| || || || ||||| ||||| ||||||| | ||| ||| |||||||| Sbjct 58947 GATGAGACGGACTGCGGTTTGGATTTCGCGGGAGGAGATGGTGGAACGCTTGTT 59000 >seq870 Length=50235 Score = 98.7 bits (108), Expect = 2e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| || | ||||||| |||| ||||| ||| | Sbjct 11046 GTACTTGGTGACAGCCTTGGTACCCTCAGACAAGGCGTGCTTGGCGAGTTCTCCGGAAAG 10987 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584 ||| || || || ||||| ||||| ||||||| | ||| ||| |||||||| Sbjct 10986 GATGAGACGGACTGCGGTTTGGATTTCGCGGGAGGAGATGGTGGAACGCTTGTT 10933 >seq184 Length=11198 Score = 96.9 bits (106), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 |||||||| | ||||||||||| || ||||| || ||||||||||| || ||||||||| Sbjct 10976 CTCTTTGAAATCATCCTCGCCGCAAATTACCTTGATATCAAGCCCCTGCTGGATTTGGGG 10917 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAG 2035721 ||||||||||| || || | || ||||| ||| Sbjct 10916 TGCAAGACCGTCGCGAATATGATTAAGGGGAAG 10884 >seq163 Length=10349 Score = 95.1 bits (104), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 431093 GATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACAT 431152 ||| |||||| | ||||||||| ||||||| ||||||||||| ||||||||||| ||||| Sbjct 10337 GATGGGCGGGAGGGAGGGTCTCATCGACACTGCCGTCAAGACCGCCGAGACGGGTTACAT 10278 Query 431153 CCAGCGTCGGTGCATCAAATCGATGGA 431179 ||||| ||| |||||| || |||| Sbjct 10277 ACAGCGACGGATCATCAAGGCGGTGGA 10251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916042799090246