Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1416 125 5e-24 seq999 105 4e-18 >seq1416 Length=13108 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | |||| |||||||| ||||| ||||| || ||| |||| | || Sbjct 8305 AGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 8364 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||||||||| || ||||||||||| | || | || |||||||| Sbjct 8365 TCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCC 8424 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | | |||| || || ||| || |||| ||| || ||| Sbjct 8425 TGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTC 8484 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || || ||||| ||||| Sbjct 8485 TTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||||||||| ||||| || || | || |||| Sbjct 8077 AGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCC 8136 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||| || |||||||| || | || | ||||||||||| Sbjct 8137 TCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCT 8196 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | || | || || ||| || || | || || ||| Sbjct 8197 TGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTC 8256 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| |||||||| ||||| Sbjct 8257 TTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 98.7 bits (108), Expect = 6e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||| || ||||| ||||| || || |||| | || Sbjct 8533 AGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCC 8592 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || ||||||||||| || ||||||||||| |||| | ||||||||||| Sbjct 8593 TCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTC 8651 Score = 86.0 bits (94), Expect = 4e-12 Identities = 119/165 (72%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 34815 TGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCC 34874 |||| | || || || ||||| ||||||||||| || ||||||||||| |||| | | Sbjct 8907 TGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATAC 8966 Query 34875 CCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATC 34932 |||||||||| | || || ||||| || || || | || | |||||| || Sbjct 8967 CCTCCTTGTCCTGAATCTTGGTCTTGAC--ATTCTCGATGGTGTCGGAAGACTCGACCTC 9024 Query 34933 AACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || |||||||| || || |||||||| || ||||| ||||| Sbjct 9025 CAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 >seq999 Length=50871 Score = 105 bits (116), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||| || ||||| ||||| || || |||| || || Sbjct 17947 AGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTCC 18006 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||||||||| || ||||||||||| | || | || || |||| Sbjct 18007 TCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTTC 18066 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | | |||| || || ||| | |||| | || ||| Sbjct 18067 TGGATTTTCGTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATCTCAAGG---ATTGTC 18123 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||||| || || || ||||| || || Sbjct 18124 TTTCCCGTGAGCGTTTTGACGAAGATTTGTAT 18155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685202604766