Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1416 102 6e-17 >seq1416 Length=13108 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | || || || || || || |||||||| || || | | || ||| Sbjct 8073 ACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACC 8132 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | || | | ||||||||| || ||||||||||| || Sbjct 8133 ATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTT 8192 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | |||||| || || ||||| ||||| || Sbjct 8193 GTCTTGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGAT 8252 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || ||||| || ||||| Sbjct 8253 CGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || |||||||| || || ||||| || || | | |||||| Sbjct 8301 ACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 8360 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||||||||| || | || | | |||||| || || || || || || || Sbjct 8361 GTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTT 8420 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || || || || || || |||| | ||||| || || || ||||| || | Sbjct 8421 GTCCTG-GATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGA 8479 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | |||||| || || || ||||| Sbjct 8480 TTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210214039874