Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1026 127 2e-24 seq986 118 1e-21 seq1416 116 4e-21 seq999 107 2e-18 seq1169 104 2e-17 >seq1026 Length=25707 Score = 127 bits (140), Expect = 2e-24 Identities = 343/515 (67%), Gaps = 15/515 (3%) Strand=Plus/Plus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 ||||| ||||| |||||||| ||||| || ||||||| || ||||| | ||| Sbjct 12364 TACTCCCCGACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCAAGGAAATCAACTCCATG 12423 Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGG 120474 || || || || || ||||| ||| || || ||||| ||||| || ||| Sbjct 12424 AAGTCAAAGGGATTTTCGGCGTTGTAGTGCTTGGGGAATCCCAAGGCGACGAGGAGACGG 12483 Query 120475 TCCGCTACAAACTCAATGTACTCGCACATG--GACTGCGCGTTCATGCCCAGCAACGCCA 120532 || || || ||||| |||||| ||||||| ||| | | |||||||| | | || | Sbjct 12484 TCAGCGACGAACTCGATGTACCGGCACATGAGGACGGAG--TTCATGCCGATGAGGGCAA 12541 Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 | || | || |||| || || | || ||| ||||||| || ||| || || Sbjct 12542 CGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTGGA 12601 Query 120593 GCATAGTGT---GGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAA 120649 | | || | | ||||| | ||| ||| || | || | || ||||| |||| Sbjct 12602 GAACGGTTTCATGAGCGGGCTT-TTG-GTT-GAGTTGTGT---GAAGAGGAGGCAAGCAA 12655 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 | || ||| ||||| ||||| || || || || |||||| || || |||||||||| Sbjct 12656 AATCGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCA 12715 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 | |||||| | |||| | |||| |||| |||||| ||| || ||||| | |||| Sbjct 12716 TCATGCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAGATACCCT 12775 Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGT-CTTGCTGTCGATCCAC 120828 | || ||| || ||||| | || || || || | || || |||| |||||||| Sbjct 12776 CAACTGCGGCGAAAGCGACGAGACGTTCTGCGAA-GACGGAGTCCTTGTCTTCGATCCAT 12834 Query 120829 TTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 | ||||| |||||||| ||||| | ||| || Sbjct 12835 CGAAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 12869 >seq986 Length=59218 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || || ||||||||||| || || || |||||||| Sbjct 6327 GTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCTT 6268 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||||| | |||| ||||||| | |||||| |||| ||||| Sbjct 6267 GTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 6208 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGG 133662 || ||||| || || || || ||||| || ||||||| Sbjct 6207 AGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCATGG 6170 >seq1416 Length=13108 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| ||| | ||| ||| || || || Sbjct 8313 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTG 8372 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| ||| | ||||| || ||||||||||| ||||| ||||||||||| |||||| Sbjct 8373 TTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTT 8432 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | || | |||||||| || |||||| || | ||||| || || || || Sbjct 8433 CGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGT 8492 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| || ||||| Sbjct 8493 GAGGGTTTTGACGAAGATTTGCAT 8516 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | ||||| || ||||||||||| ||||| || ||||| Sbjct 8914 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTT 8973 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||||| | ||| | ||||||| | ||| || || | |||| Sbjct 8974 GTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAACGTGAT 9033 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || || || || ||||| || ||||| Sbjct 9034 GGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || ||| | ||||| || |||||||| || || ||||||||||| Sbjct 9291 GTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCTT 9350 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| |||| | ||| | |||||||| | || || |||| |||| Sbjct 9351 GTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTGAT 9410 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||||| ||| || || || || ||||| Sbjct 9411 GGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCAT 9446 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/205 (68%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || || || || ||||| ||| | ||| ||||||||| || ||||| Sbjct 8547 GGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGTTTGCC 8606 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || ||||||||||| ||||| || |||||||| |||||| ||| Sbjct 8607 GGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGTCTT 8666 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA-------CGGTTTTGCCGG 133635 | | ||| | ||||| | | || || || | ||||| |||| || | Sbjct 8667 CACATTCTCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNNNNNNNNTTTTTCCCG 8726 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| || ||||| Sbjct 8727 TGAGCGTTTTGACGAAGATTTGCAT 8751 >seq999 Length=50871 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | ||||| || ||||||||||||||||| || || || Sbjct 19348 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGAGGGATACCCTCGTT 19407 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||||| | ||| | ||||||| | ||| || || | |||| Sbjct 19408 GTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAACGTGAT 19467 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| || || || || ||||| || ||| || Sbjct 19468 GGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCTTG 19504 >seq1169 Length=14909 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||||| ||| | ||||| | |||||||| || || ||||| ||||| Sbjct 5700 GTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATGCCCTCCTT 5641 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| |||| | ||| | ||||||| | |||||| || | ||||| Sbjct 5640 GTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCAAGGGTGAT 5581 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || ||||| ||||| || |||||| Sbjct 5580 TGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCATG 5544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409234157360