Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1026 147 3e-29 seq972 127 3e-23 >seq1026 Length=25707 Score = 147 bits (162), Expect = 3e-29 Identities = 234/331 (71%), Gaps = 5/331 (2%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| ||||||||||| || || || ||||| || || || |||||||| Sbjct 13263 TGGCAAATGTAC-AAAAAGGCCGAAGCTTCTTTCTGGACTGCTGAAGAAGTCGACCTTTC 13205 Query 1455839 CGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | ||| |||| |||||| || || | |||||||| || | |||||| | Sbjct 13204 CAAGGACCTGGTCGACTGGGAAAACCGTCTCAATGACGACGAACGTTACTTCATCTCCCG 13145 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||| ||||| || ||| || || || ||||| ||| ||||| | || |||| Sbjct 13144 CGTCCTTGCCTTCTT-CGCTGCGTCTGACGGTATCGTCAACGAAAACCTCGTCGAGCGCT 13086 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | | || || ||||| | || || || || | || || || || |||||| || | Sbjct 13085 TCAGCAATGAAGTCCAGATCCCTGAAGCCCGCTGCTTCTATGGCTTTCAGATCATGATTG 13026 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||| ||| ||||| ||||||||| |||||||||||||| |||||||| ||| | Sbjct 13025 AGAACATTCACAGTGAAATGTACTCGCTCTTGATCGACACCTACATCAAGGACTCGGCAG 12966 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 || || ||| ||| |||| ||||||| Sbjct 12965 AGCGAGAGTTCCTGTTTGACGCCCTCGACAC 12935 Score = 98.7 bits (108), Expect = 1e-14 Identities = 182/259 (70%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 1456520 CAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTG 1456579 || |||||| ||| || || | ||||| |||| || ||| ||| | || || || Sbjct 12599 CAAATCATCACCGAAGCGGTGGGCATCGAACAAGAATTCCTCACCGACGCTCTCCCCGTT 12540 Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 || ||||||||||||||| || | |||||||||| |||||| | | || ||||| |||| Sbjct 12539 GCCCTCATCGGCATGAACTCCGTC-CTCATGTGCCGGTACATCG-AGTTCGTCGCTGACC 12482 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAA---CCCGTTCCCA 1456696 | || |||| || | || | | ||||||||| ||| | || ||| || | Sbjct 12481 GTCTCCTCGTCGCCTTGGGATTC-CCCAAGCACTAC--AACGCCGAAAATCCCTTTGAC- 12426 Query 1456697 TGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG-CGCCGCGTGGCGAG 1456755 | ||||||||||| || | |||||||||||||||| || ||| | | || ||| Sbjct 12425 TTCATGGAGTTGATTTCCTTGCAGGGCAAGACCAACTTCTTTGAGAAGAAGGTCGGGGAG 12366 Query 1456756 TACGCCAAGGCCGGCGTCA 1456774 || ||||||||||||| Sbjct 12365 TATCAAAAGGCCGGCGTCA 12347 >seq972 Length=266462 Score = 127 bits (140), Expect = 3e-23 Identities = 258/383 (67%), Gaps = 15/383 (4%) Strand=Plus/Plus Query 259800 GGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACA 259859 |||| ||| | |||||||||||||| || | || | |||| || |||||| || Sbjct 233992 GGCCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCATGG---TGACGACGTAGA-- 234046 Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAG 259919 ||| || ||| || ||||| |||||| | ||| |||||| | Sbjct 234047 -TGC---------CGCCATCGAAACATACGAACTCATGTCCGAAAAGTACTTCACCCACG 234096 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | | ||||| ||||| ||||||||||| || | |||||| || || || || || Sbjct 234097 CATCACCCACCCTCTTCAATGCCGGCACCCCTCACCCGCAACTCTCCTCCTGTTTCTTGC 234156 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | ||||||| ||| || ||||| ||||| || || || || || |||||| | | Sbjct 234157 TCACGATGAAGGACGACTCCATCGACGGCATTTACGAAACTCTGAAAACTTGCGCGATGA 234216 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 ||||||| | || ||||| |||||| || | || ||| | ||||| ||| | | Sbjct 234217 TCTCCAAAACCGCTGGCGGTATCGGTATTAATGTGCATAAGATTCGCGCTTTGGGATCGT 234276 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || ||||| ||||| | |||||||| ||||||||||| | | || | ||| Sbjct 234277 ACATTGCTGGCACGAACGGGTACTCCAACGGGATTGTGCCCATGTTGAGGGTATACAACA 234336 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 | || ||||| || || |||||| Sbjct 234337 ATACTGCGCGGTATGTTGACCAG 234359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177626591182068