Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq972 129 6e-25 seq1416 122 9e-23 seq999 107 2e-18 seq1169 91.5 1e-13 >seq972 Length=266462 Score = 129 bits (142), Expect = 6e-25 Identities = 282/420 (67%), Gaps = 3/420 (1%) Strand=Plus/Plus Query 7563 TCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTT 7622 ||| |||||||| |||| || || || || ||||| || || ||| | || |||||| | Sbjct 233996 TCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCATGGTGACGACGTAGATGCCGCCAT 234055 Query 7623 GGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGC 7682 ||||| ||| || | ||||| || | || || ||||| || |||||| | || Sbjct 234056 CGAAACATACGAACTCATGTCCGAAAAGTACTTCACCCACGCATCACCCACCCTCTTCAA 234115 Query 7683 CGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || ||||| || ||| | ||||| ||||| ||||| || ||| || ||| Sbjct 234116 TGCCGGCACCCCTCACCCGCAACTCTCCTCCTGTTTCTTGCTCACGATGAAGGACGACTC 234175 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||||||||||||| | || ||| |||||| | || |||||| || ||||| Sbjct 234176 CATCGACGGCATTTACGAAACTCTGAAAACTTGCGCGATGATCTCCAAAACCGCTGGCGG 234235 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||| | || || | | | ||||| || ||| | ||| ||||| Sbjct 234236 TATCGGTATTAATGTGCATAAGATTCGCGCTTTGGGATCGTACATTGCTGGCACGAACGG 234295 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | ||| ||| | | |||||||||| | || | ||| || | | ||| |||| || Sbjct 234296 GTACTCCAACGGGATTGTGCCCATGTTGAGGGTATACAACAATACTGCGCGGTATGTTGA 234355 Query 7923 CCAGGG-GGGA--AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| |||| ||||| || || ||| || ||||||||||| ||||| ||||| Sbjct 234356 CCAGGGTGGGAATAAGCGGCCTGGTGCTTTTGCTATTTATTTGGAGCCTTGGCATGCGGA 234415 >seq1416 Length=13108 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||||||| || || || ||||| ||||||||||||||| Sbjct 8062 CCACCACGGAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 8121 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || | ||| || || ||||| || | ||| |||||||| || || Sbjct 8122 AGCGTACGACCATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGA 8181 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || |||||| || | |||||||| || ||||| Sbjct 8182 ATACCCTCCTTGTCTTGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACT 8241 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || ||||| | || || || || |||||||| Sbjct 8242 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || ||||||||||| || |||||||||||| Sbjct 8290 CCACCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 8349 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || |||||||| || || || | ||| ||||| ||||| || Sbjct 8350 AGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGG 8409 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || || | |||||||| || ||||| Sbjct 8410 ATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACC 8469 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | ||||| ||||| |||||||| Sbjct 8470 TCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 105 bits (116), Expect = 7e-18 Identities = 152/216 (70%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || |||||||||||||| |||||||||||| | ||| | ||| ||| Sbjct 8536 ACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCG 8595 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || |||||||| || || || | ||| ||||| |||||||| || || || || || || Sbjct 8596 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGG 8655 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAA-------T 134677 || || || || || | ||||| |||||||| || || || || | Sbjct 8656 ATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNNNNNN 8715 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || | ||||| ||||| |||||||| Sbjct 8716 NNTTTTTCCCGTGAGCGTTTTGACGAAGATTTGCAT 8751 >seq999 Length=50871 Score = 107 bits (118), Expect = 2e-18 Identities = 153/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || |||||||||||||| |||||||||||| | ||| | ||| ||| Sbjct 17950 ACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTCCTCG 18009 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT-TTCTTG 134623 || |||||||| || || || | ||| ||||| || || || ||||||||||| |||| | Sbjct 18010 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTTCTGG 18069 Query 134624 AATTTTTTGT-TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 | |||| || || || || | |||||||| | |||| || || || || | Sbjct 18070 A--TTTTCGTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATCTCAAG---GATTGTCT 18124 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || | ||||| ||||| ||||| || Sbjct 18125 TTCCCGTGAGCGTTTTGACGAAGATTTGTAT 18155 >seq1169 Length=14909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 134549 GGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTAT 134608 |||| || ||| |||||||| |||| || || || | | | ||||| || || || || Sbjct 5709 GGTGCGACCGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAAT 5650 Query 134609 GCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTC 134668 ||| || || ||||| || || |||||| || | ||||||||||| ||||| || Sbjct 5649 GCCCTCCTTGTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTC 5590 Query 134669 GAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || | ||||| ||||| |||||||| Sbjct 5589 AAGGGTGATTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCAT 5545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505386308343280