Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq736 96.9 5e-15 >seq736 Length=77482 Score = 96.9 bits (106), Expect = 5e-15 Identities = 168/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 |||||| ||| ||||| |||||| | ||||| |||||||||| || | |||||| | Sbjct 55987 CATTTCGCTATGAATGTTCTCAATCATCGTCTGATATCCGTAAAAGCACCGTGCTTCTGC 56046 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 | | || ||||| | |||| |||||||||||| || || || || || Sbjct 56047 ATTCTGAACCTCGTTCGAGAATCGCATATTCAAATTTTCATTGACAATGCCGTCCGATGC 56106 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC--GGGTG-TCAATTTATT 40086 |||||| || ||||| ||||| | ||||| ||| | || || || || | || | Sbjct 56107 GGCAAAGAACGCCAAGACATGACTTATAAAGTATCTCTCGTCCTGGTTGAGCTTGTTCTC 56166 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 |||||| || || || | | ||| || |||||||| ||||| ||||| ||||| || Sbjct 56167 CCAGTCGCCTATGTCCTTCGCAAGATCGACCTCTTCAGCGGTCCAGAACGAAGCCTCAGC 56226 Query 40147 CT 40148 || Sbjct 56227 CT 56228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892365706960