Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1026 93.3 3e-14 >seq1026 Length=25707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTT 44134 || || |||||||| ||| |||||| | || || || || | |||||| || Sbjct 12854 AAGGCCGACTGGGCTCTTCGATGGATCGAAGACAAGGACTCCGTCTTCGCAGAACGTCTC 12795 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 ||||| || || | || || || || ||||| || || || ||||| |||| || ||| Sbjct 12794 GTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTTGCTTCCATCTTCTGG 12735 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| ||||| ||||||| || | || || || || || | || ||||| Sbjct 12734 CTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGAACTCATCTCCCGTGAC 12675 Query 44255 GAAGGCTTACATTGCGATTTTGCTTGC 44281 |||||| | || ||||||||||||||| Sbjct 12674 GAAGGCCTCCACTGCGATTTTGCTTGC 12648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446728593570