Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1416 100 2e-16 >seq1416 Length=13108 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||||||| | | || | || || | ||| || || Sbjct 8092 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTCCAACTGCTTCCCC 8151 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | |||||||| || ||||| || || | |||||| || || |||||| |||| Sbjct 8152 GCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTGGATCTTCGTTTTG 8211 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | || || ||||| ||||| || | ||||| || || || Sbjct 8212 ACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTC 8271 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||||||||||||| Sbjct 8272 TTCACAAAGATTTGCATA 8289 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| ||||||| || ||||| ||| Sbjct 8320 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGTTTGCCG 8379 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||| || || || || || | || || || || |||||| | ||| Sbjct 8380 GCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTC 8439 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| | || || || || || || || | || ||||| || ||| Sbjct 8440 ACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTT 8499 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 8500 TTGACGAAGATTTGCATA 8517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/205 (69%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || ||||||||| | |||| |||| ||||| ||||| ||| Sbjct 8548 GTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGTTTGCCG 8607 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||| || || || ||||| | |||||| || || |||||| | ||| Sbjct 8608 GCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGTCTTC 8667 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA-------TTTGCCCGT 27223 | | || | ||||| | | ||| || || || || | ||| ||||| Sbjct 8668 ACATTCTCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNNNNNNNNTTTTTCCCGT 8727 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || |||||||||||| Sbjct 8728 GAGCGTTTTGACGAAGATTTGCATA 8752 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||| || ||||| || |||||| | |||||||| || || || || || | || || | Sbjct 9290 CGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCT 9349 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || |||||| |||| | | | || | ||||| | | ||| || || || || | Sbjct 9350 TGTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTGA 9409 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTA 27255 | | ||||| |||| ||| ||||||||||||||||| | || || Sbjct 9410 TGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCATTGTTGGTA 9454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924487608368