Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1026 131 2e-25 seq972 93.3 5e-14 >seq1026 Length=25707 Score = 131 bits (144), Expect = 2e-25 Identities = 338/501 (67%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 122370 ATAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCAT-CAAGGCTAATGTTTTCCA 122428 ||| ||||||||| ||||||||||||||||||||| || | ||||| ||| |||| Sbjct 12363 ATACTCCCCGACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCAAGGA-AATCAACTCCA 12421 Query 122429 TAAAGTCAAATGGATTCTTCGCGTTCCAAA--TGGGTGGCACCCCAACTTGTTTGAGGAG 122486 | |||||||| ||||| | ||||| | | || || | ||||| | |||||| Sbjct 12422 TGAAGTCAAAGGGATTTTCGGCGTTGTAGTGCTTGG-GGAATCCCAAGGCGAC-GAGGAG 12479 Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 ||| || | || |||| |||||| | |||| | |||||||| ||||||||| Sbjct 12480 ACGGTCAGCGACGAACTCGATGTACCGGCACATGAGGACGGAGTTCATGCCGATGAGGGC 12539 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 | ||||| ||||| || ||| ||| || || | ||||| || | | ||| Sbjct 12540 AACGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTG 12599 Query 122607 GTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCT-TGAAGAGCTCCACGGCAAACT 122665 | | | ||||| || ||| || || | | | ||||||| ||||| | Sbjct 12600 GAGAACGGTTTCATGAGCGGG-CTTTTGGTTGAGTTGTGTGAAGAGGAGGCAAGCAAAAT 12658 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | |||||| || || || ||||| || ||||| || ||||| || || ||||| | Sbjct 12659 CGCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCA 12718 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || |||||||||| ||| | || | ||| || || |||||||||||||||||||| Sbjct 12719 TGCCTCGCTTCTTCAGCCAGAAGATGGAAGCA-AAGGAGCCGGAGAAGAAGATACCCTCA 12777 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTT 122843 || || || || | || ||||| ||||| || ||| | ||| | || | |||| Sbjct 12778 ACTGCGGCGAAAGCGACGAGACGTTCTGCGAA-GACGGAGTCCTTGTCTTCGATCCATCG 12836 Query 122844 CATTGCCCATTTCGCCTTCTT 122864 | ||||| | |||||||| Sbjct 12837 AAGAGCCCAGTCGGCCTTCTT 12857 >seq972 Length=266462 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 |||||| | || || |||| ||| ||||| ||||| | | || | ||| || ||| Sbjct 234199 AGAGTTTCGTAAATGCCGTCGATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAG 234140 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-C 111996 | ||||| || || || |||||||||||||| |||| |||||| |||| ||| Sbjct 234139 AGTTGCGGGTGAGGGGTGCCGGCATTGAAGAGGGTGGGTGATGCGTGGGTGAA-GTACTT 234081 Query 111997 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 || |||||| |||||||| || | | | | ||| | ||| || || || || |||| Sbjct 234080 TTCGGACATGAGTTCGTATGTTTCGATGGCGGCATCTACGTCGTCACCATGAATACCGAC 234021 Query 112057 TGCGACCCGCATGAACATGTACTGTGGGGTTTC 112089 || || ||||||| ||||| ||| || |||| Sbjct 234020 AGCAACACGCATGAGCATGTGCTGAGGCCTTTC 233988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016974334400