Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1026 152 6e-32 seq834 95.1 1e-14 >seq1026 Length=25707 Score = 152 bits (168), Expect = 6e-32 Identities = 307/451 (68%), Gaps = 6/451 (1%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| ||||| ||| |||||| |||||||| ||||| || | |||| || |||||| Sbjct 12363 ATACTCCCCGACCTTCTTCTCAAAGAAGTTGGTCTTGCCCTGCAAGGAAATCAACTCCAT 12422 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCT--GGCACTCCAATCTGTTTGAGGAGA 129844 || ||||| || || | | ||| | |||| || | ||| | ||||||| Sbjct 12423 GAAGTCAAAGGGATTTTCGGCGTTGTAG--TGCTTGGGGAATCCCAAGGCGACGAGGAGA 12480 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || || | |||| |||| |||||| |||| |||||||||| ||||||||| | Sbjct 12481 CGGTCAGCGACGAACTCGATGTACCGGCACATGAGGACGGAGTTCATGCCGATGAGGGCA 12540 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 ||||| ||||| || ||| | | || ||| |||| ||||| | ||| | Sbjct 12541 ACGGGGAGAGCGTCGGTGAGGAATTCTTGTTCGATGCCCACCGCTTCGGTGATGATTTGG 12600 Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCT-TGAAGAGTTCCACGGCAAACTC 130023 ||| ||| || || || || ||| | | | ||||||| ||||| || Sbjct 12601 AGAACGGTTTCA-TGAGCGGGCTTTTGGTTGAGTTGTGTGAAGAGGAGGCAAGCAAAATC 12659 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||| || |||||||||||||||||||| || ||||| || || ||||| | Sbjct 12660 GCAGTGGAGGCCTTCGTCACGGGAGATGAGTTCGTTGGAGAAAGTGAGGCCGGGCATCAT 12719 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||||| |||||| || | | ||| ||||| ||||||||||| ||||| || Sbjct 12720 GCCTCGCTTCTTCAGCCAGAAGATGGAAGCAAAGGAGCCGGAGAAGAAGATACCCTCAAC 12779 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||||| || | |||||| || || ||| Sbjct 12780 TGCGGCGAAAGCGACGAGACGTTCTGCGAAG 12810 >seq834 Length=203524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 205/301 (68%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 179808 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACATCTTGATAATCCTTAC 179866 ||| ||||| ||||| | | || || || ||||| | |||| | |||| | || | Sbjct 45233 ATCAGTCATGATCATCAAATGGCCGTAACGCAAGCT-GTCCACATTCTCATAAACTTTTC 45291 Query 179867 CTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCG 179926 | || || | |||| ||| | |||| | |||| ||| |||| |||| ||| | Sbjct 45292 CGTGCTGCAACCCCATGATTTGTTTGATCGCGTTGATTTCTCCATTTGCAGTGATTTGAG 45351 Query 179927 CCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGAT 179986 | | ||| || || ||||| |||| || || ||||||||||| ||| | | | Sbjct 45352 CATGAGTAGCTTCCCGAACATTGAGCAACTTTCCGCGCAGAGGGAACACTCCGAAATTGT 45411 Query 179987 CACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCA 180046 | || || ||||| || || || | || ||| |||||| |||||||| || || |||| Sbjct 45412 CCCGTCCGACCACCGACAGGCCGGAAATTGCTGTGGTCTTAGCGGAATCTCCTTCGGTCA 45471 Query 180047 CGATGAGCGTACA---CTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACT 180103 ||| | ||| || ||||| ||| | |||||||| || ||||||||| |||||| Sbjct 45472 AGATTAACGTGCAGTGTTTTCC--ATTACG-TGTCCCTGCATTATTCGCGTCGGCCAACT 45528 Query 180104 T 180104 | Sbjct 45529 T 45529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618420403937840