Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1026 114 2e-20 seq972 107 2e-18 >seq1026 Length=25707 Score = 114 bits (126), Expect = 2e-20 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||||| || || | ||||| || || |||||| | ||| | || |||| | | | Sbjct 12873 AGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTTCGATGGATCGAAGACAAGGACTC 12814 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 || || || || || ||| |||| || || |||||||||||||||||||| || | Sbjct 12813 CGTC-TTCGCAGAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCT 12755 Query 94853 CCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 94911 |||| ||| | || | ||||| ||||||||||| | ||||| || ||| |||||| Sbjct 12754 CCTT-TGCTTCCATCTTCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCC 12696 Query 94912 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| || ||||| |||||||| || |||||| || ||||| Sbjct 12695 AACGAACTCATCTCCCGTGACGAAGGCCTCCACTGCGATTTTGC 12652 >seq972 Length=266462 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| || ||| ||||| ||||||| || || ||||||||||||| || ||| | ||| Sbjct 233988 GAAAGGCCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCATGGTGACGACGTAGAT 234047 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCC-CAAGGTATGTTCATTCACGCAACACCAAC 104334 | | | | || |||||||| |||||| || ||| |||| |||||| |||| || Sbjct 234048 GCCGCCATCGAAACATACGAACTCATGTCCGAAAAGTA-CTTCACCCACGCATCACCCAC 234106 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 |||||||||||| || || || || ||| | ||| || ||| | || | | || Sbjct 234107 CCTCTTCAATGCCGGCACCCCTCACCCGCAACTCTCCTCCTGTTTCTTGCTCACGATGAA 234166 Query 104395 GGAGGACTCAATCAACGGTATCTATGGAACTCT 104427 ||| ||||| ||| |||| || || | |||||| Sbjct 234167 GGACGACTCCATCGACGGCATTTACGAAACTCT 234199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 302/463 (65%), Gaps = 10/463 (2%) Strand=Plus/Plus Query 105140 GTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGT 105199 |||||||| ||||| |||| | | ||||| | || | ||||| || || || Sbjct 235168 GTCACCAAGAACCTCAACAAAATCATTGACATCAACTACTACCCGGTCCCCGAAGCCCGC 235227 Query 105200 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTC 105259 || || || ||| | ||||| || || ||||| || || || ||||| || || | ||| Sbjct 235228 AAGTCGAACATGCGCCACCGCCCCATCGGTCTGGGCGTCCAAGGTCTTGCCGACGCTTTC 235287 Query 105260 ATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCG-CATATT 105318 ||| ||| | || ||||| | || || | |||| |||| ||| Sbjct 235288 ATTAAGATGCGCATGCCCTTCGATTCGCAAGAGGCCCGTCAGCTCAAC-CGCGACATCAG 235346 Query 105319 TGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCC 105378 |||||| ||||| || || ||||| || || |||||||| || || || | Sbjct 235347 TGAGACGATGTACTTTGCTGCCCTTGAAGCTTCTTGCGAGTTGGCTCAGAAGGAAGGGAC 235406 Query 105379 ATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGG 105436 |||||||| | |||||| || | ||| |||||| || || ||| || |||||| Sbjct 235407 GTATGAAACTTATGAGGGAAGCCCTG--TCAGCAAGGGTGTCCTCCAACCAGACATGTGG 235464 Query 105437 GAAGGTGAGACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCA--TCAAGGAGA 105494 | | ||||| | | | ||||||| | ||| || | || || | Sbjct 235465 AACGTCAAGACCTCGGACCGATGGGACTGGGCCGAACTCC--GATCCCAAATCGCCAAAC 235522 Query 105495 AGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCT 105554 | ||| | | ||| |||||| | || || ||||| || ||||||||| | |||||| Sbjct 235523 ACGGTATCAGGAACTCCCTCCTCGTCGCACCCATGCCGACCGCCTCCACCTCGCAAATCC 235582 Query 105555 TGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 | || || || |||||||| |||||||||||| | |||||||| Sbjct 235583 TAGGCAACAACGAATGCTTCGAACCCTACACGTCCAACATCTA 235625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246845485360