Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1416 140 1e-27 seq999 125 2e-23 seq1600 102 2e-16 seq986 89.7 2e-12 >seq1416 Length=13108 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| || || || || || || || || | Sbjct 8282 TTTGCATACCACCACGGAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGT 8341 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || |||||||||||||| || || ||||| ||||||||||| | Sbjct 8342 AGTCGGAGAGGGTGCGGCCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGT 8401 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || |||||||| || ||||| || || | || || || || |||| || || | Sbjct 8402 CGGGGGGGATTCCTTCCTTGTCCTGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGG 8461 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| || | |||||| || || || ||||| || || || ||||| Sbjct 8462 ACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 125 bits (138), Expect = 2e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 ||||| |||||||| | | || || || || || || ||||| || ||||| || || Sbjct 8055 TTACAACCCACCACGGAGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTA 8114 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || | || || ||||| || | || || || |||||||| |||||||||||||| Sbjct 8115 GTCGGAGAGCGTACGACCATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATC 8174 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| ||||| || || || || || || || | ||| || || || || | || || | Sbjct 8175 AGGGGGAATACCCTCCTTGTCTTGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGA 8234 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || | ||||| ||||| || || || ||||| || ||||| Sbjct 8235 CTCCACTTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 109 bits (120), Expect = 2e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 140566 CAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAG 140625 |||| | || || || || ||||| || || || || ||||| ||||||||||| |||| Sbjct 9275 CAGAGAGGGTACGACCGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAG 9334 Query 140626 GAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 | ||||| ||||| || |||||||| || | ||| || || || |||| || || | || Sbjct 9335 GGGGAATGCCTTCCTTGTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATT 9394 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || | ||||| ||||| | || || ||||| || |||||| Sbjct 9395 CGACCTCGAGCGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCATT 9447 Score = 95.1 bits (104), Expect = 4e-14 Identities = 165/242 (68%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | || || || ||||| || || || ||||| || || | Sbjct 8510 TTTGCATACCGCCGCGAAGACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGT 8569 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || |||||||| || || ||||| ||||||||||| | Sbjct 8570 AGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGT 8629 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | || ||||| || || | || || | Sbjct 8630 CGGGCGGGATACCCTCCTTGTCCTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACG 8689 Query 140683 GTTCAACTTCAAGTGTAA-------CTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 ||| || || || || | | ||||| || || ||||| || || || ||| Sbjct 8690 ATTCGACCTCCAGGGTGANNNNNNNNNNTTTTTCCCGTGAGCGTTTTGACGAAGATTTGC 8749 Query 140736 AT 140737 || Sbjct 8750 AT 8751 >seq999 Length=50871 Score = 125 bits (138), Expect = 2e-23 Identities = 169/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| | |||||||||| || | || || || ||||| || || || ||||| || || | Sbjct 17924 TTTGCGTACCACCACGGAAACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGT 17983 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || | || || |||||||| || || ||||| ||||||||||| | Sbjct 17984 AGTCGGAGAGAGTGCGGTCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGT 18043 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| |||||||| | ||| ||||| | || || || || |||| || || | Sbjct 18044 CAGGGGGAATGCCTTCTTTGTTCTGGATTTTCGTCTTCACGTTTTCGATCGTGTCGGAGG 18103 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | ||||| | ||||||||| || || ||||| || || || || || Sbjct 18104 TCTCCATCTCAAG---GATTGTCTTTCCCGTGAGCGTTTTGACGAAGATTTGTAT 18155 >seq1600 Length=33002 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 349232 TGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGA 349291 ||||| | || ||||||||||| ||||| ||||| || || || || ||||| ||| | Sbjct 29255 TGTGTGGGAGTGTGGCAAAATGACCGTGTCGAAATCATCGCCAACGACCAAGGAAACCGC 29314 Query 349292 ACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAA 349351 || || || ||||| || || || |||| || |||||| | ||||||||| | ||||| Sbjct 29315 ACCACCCCCTCATATGTCGCTTTCTCCGACACCGAGCGTCTCATTGGTGATGCCGCAAAG 29374 Query 349352 AATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGA 349411 || |||| || || || | || || || || || |||||||| | || ||| | Sbjct 29375 AACCAAGTCGCCATGAACCCCACCAACACCGTCTTCGACGCTAAGCGTTTGATCGGTCGT 29434 Query 349412 AGTTTTTCTGA 349422 |||| |||| Sbjct 29435 CGTTTCGCTGA 29445 >seq986 Length=59218 Score = 89.7 bits (98), Expect = 2e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 140566 CAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAG 140625 |||| | || || || || || || || || || || ||||| ||||| ||||| |||| Sbjct 6343 CAGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAG 6284 Query 140626 GAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 | ||||||||||| || |||||||| || | || || || ||||| | || || | | Sbjct 6283 GGGGAATTCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACT 6224 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || | ||||| || || || || || || || || ||||| Sbjct 6223 CCACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCAT 6172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515217241226942