Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq972 140 4e-28 seq1026 114 1e-20 >seq972 Length=266462 Score = 140 bits (154), Expect = 4e-28 Identities = 287/424 (68%), Gaps = 2/424 (0%) Strand=Plus/Minus Query 79480 TCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGG 79539 || || ||||| ||||||| ||| || || || | ||| ||||| || |||||| Sbjct 234415 TCCGCATGCCAAGGCTCCAAATAAATAGCAAAAGCACCAGGCCGCTTATTCCCACCCTGG 234356 Query 79540 TTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG 79599 | || ||||| || || |||||| | || | | ||||||||| || |||| || | Sbjct 234355 TCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCGTTGGAGTAC 234296 Query 79600 CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAG-TGGATTCCGAT 79658 |||||||| || || | || || ||||| || ||| | || ||||| Sbjct 234295 CCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTAT-GCACATTAATACCGAT 234237 Query 79659 GCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718 || || | |||||||| |||||| || || || ||||| ||||| ||||| Sbjct 234236 ACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAATGCCGTCGAT 234177 Query 79719 CGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGC 79778 |||||||||||||| | || || ||| ||| || | || |||| || ||||| Sbjct 234176 GGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAGGGGTGCCGGC 234117 Query 79779 GTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 ||||||||||| || | ||||| |||||| |||||| | ||| || ||||| || || Sbjct 234116 ATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTTCGTATGTTTC 234057 Query 79839 CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG 79898 || || | |||||| || || || ||||| || || ||||||| | || ||| Sbjct 234056 GATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGAGCATGTGCTG 233997 Query 79899 GGGC 79902 ||| Sbjct 233996 AGGC 233993 Score = 120 bits (132), Expect = 3e-22 Identities = 276/409 (67%), Gaps = 14/409 (3%) Strand=Plus/Plus Query 20072 GCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGAC 20131 || ||||||||||| ||||||||||| || |||| | |||||||| || || |||||| Sbjct 235222 GCCCGCAAGTCGAACATGCGCCACCGCCCCATCGGTCTGGGCGTCCAAGGTCTTGCCGAC 235281 Query 20132 GTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCG--AGCTCAACAAGG 20189 | |||||| | | | || | | ||||| || |||| || || |||||||| | Sbjct 235282 GCTTTCATTAAGATGCGCATGCCCTTCGAT--TCGCAAGAGGCCCGTCAGCTCAACCGCG 235339 Query 20190 GCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGG 20249 |||| ||| | ||||| || ||||| | || ||||| | || | ||| Sbjct 235340 ACATCAGTGAGACGATGTACTTTGCTGCCCTTGAAGCTTCTTGCGAGTTGGCTCAGAAGG 235399 Query 20250 ACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCG--AGGGTATCCTCCAGCCGGA 20307 | || |||| || || | |||| |||| ||| | ||||| ||||||| || || Sbjct 235400 AAGGGACGTATGAAACTTATGAGGGAA-GCCCT-GTCAGCAAGGGTGTCCTCCAACCAGA 235457 Query 20308 CATGTGGGGCGTCA----CTGAGAATGA--GTTTTGGAGCGCCCTCAAGGTTGAGATCAA 20361 ||||||| ||||| || || || | ||| || ||| | ||| Sbjct 235458 CATGTGGAACGTCAAGACCTCGGACCGATGGGACTGGGCCGAACTCCGATCCCAAATCGC 235517 Query 20362 GACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCA 20421 | ||||| | | ||||| | |||||||| ||||||||||||||||| ||| | || Sbjct 235518 CAAACACGGTATCAGGAACTCCCTCCTCGTCGCACCCATGCCGACCGCCTCCACCTCGCA 235577 Query 20422 GATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 ||| | || |||||||| ||||| || |||||| ||||||||||| Sbjct 235578 AATCCTAGGCAACAACGAATGCTTCGAACCCTACACGTCCAACATCTAC 235626 Score = 111 bits (122), Expect = 2e-19 Identities = 310/468 (66%), Gaps = 16/468 (3%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| |||||| || ||||| |||||||| || | ||| || | ||| || Sbjct 235626 GTAGATGTTGGACGTGTAGGGTTCGAAGCATTCGTTGTTGCCTAGGATTTGCGAGGTGGA 235567 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCT-CGA 78652 ||||||||||||||||||||| || || || |||| | ||| || | ||| | || Sbjct 235566 GGCGGTCGGCATGGGTGCGACGAGGAGGGAGTTCCTGATACCGTGTTTGGCGATTTGGGA 235507 Query 78653 CC---TTTAGGCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 | || |||| |||||| || | | || ||||||||| ||||| || Sbjct 235506 TCGGAGTTCGGCCCAGTCCCATCGGTCCGAGGTCTTGACGTTCCACATGTCTGGTTGGAG 235447 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 || ||||| | | || |||| | || || || | || |||| || || | Sbjct 235446 GACACCCTTGCTGACAGGGCTTCCCTCATAAGTTTCATACGTCCCTTCCTTCTGAGCCAA 235387 Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827 ||||| || | ||||| || ||||| | ||| |||| | |||||||| Sbjct 235386 CTCGCAAGAAGCTTCAAGGGCAGCAAAGTACATCGTCTCACTGATGTCGCGGTTGAGCTG 235327 Query 78828 GCGCGCCTTGGTCTCGTCGAA-CGAAAGGC-CGAGCATC---ATGAAGACATCGGCCAGG 78882 || ||| ||| | |||| |||| ||| | ||||| ||||| | ||||| || Sbjct 235326 ACGGGCC----TCTTG-CGAATCGAAGGGCATGCGCATCTTAATGAAAGCGTCGGCAAGA 235272 Query 78883 CCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC 78942 || |||||||| | | |||| || |||||||||||||| ||| ||||| | | | Sbjct 235271 CCTTGGACGCCCAGACCGATGGGGCGGTGGCGCATGTTCGACTTGCGGGCTTCGGGGACC 235212 Query 78943 GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990 ||||| |||| || |||| ||| ||||| ||||||||| Sbjct 235211 GGGTAGTAGTTGATGTCAATGATTTTGTTGAGGTTCTTGGTGACGACC 235164 >seq1026 Length=25707 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || ||| |||||||| | ||||| || || || || ||||||||||| ||||| || Sbjct 12809 TTCGCAGAACGTCTCGTCGCTTTCGCCGCAGTTGAGGGTATCTTCTTCTCCGGCTCCTTT 12750 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 | | || |||||||| || ||||| ||| | ||||| ||||| | |||||||||||| Sbjct 12749 GCTTCCATCTTCTGGCTGAAGAAGCGAGGCATGATGCCCGGCCTCACTTTCTCCAACGAA 12690 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || ||||| ||||| |||||||| Sbjct 12689 CTCATCTCCCGTGACGAAGGCCTCCA 12664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548511676544160