Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq972 107 2e-18 seq834 95.1 1e-14 >seq972 Length=266462 Score = 107 bits (118), Expect = 2e-18 Identities = 282/425 (66%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTG 53237 ||||||| | | ||||||| || || | ||||| || ||||||||| || | || | Sbjct 233993 GCCTCAGCACATGCTCATGCGTGTTGCTGTCGGTATTCATGGTGACGACGTAGATGCC-G 234051 Query 53238 TCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGT 53297 | || || ||||| | ||| | |||||||||| || ||||| | || ||||| | Sbjct 234052 CCATCGAAACATACGAACTCATGTCCGAAAAGTACTTCACCCACGCATCACCCACCCTCT 234111 Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357 |||| || || || |||||| || | || ||| ||| || | |||||||||| | Sbjct 234112 TCAATGCCGGCACCCCTCACCCGCAACTCTCCTCCTGTTTCTTGCTCACGATGAAGGACG 234171 Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 |||| ||||||||||| ||||| || || || || || |||||||| | | Sbjct 234172 ACTCCATCGACGGCATTTACGAAACTCTGAAAACTTGCGCGATGATCTCCAAAACCGCTG 234231 Query 53418 GTGGTATCGGTATCCA-CTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACG 53476 | ||||||||||| | ||| || | || || || | || || ||| Sbjct 234232 GCGGTATCGGTATTAATGTGC-ATAAGATTCGCGCTTTGGGATCGTACATTGCTGGCACG 234290 Query 53477 AACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 ||||| | || | || || ||||| ||| | | || | |||||| || || ||||| Sbjct 234291 AACGGGTACTCCAACGGGATTGTGCCCATGTTGAGGGTATACAACAATACTGCGCGGTAT 234350 Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 || |||||||||| ||||| || | || || || || | ||||| ||||| Sbjct 234351 GTTGACCAGGGTGGGAATAAGCGGCCTGGTGCTTTTGCTATTTATTTGGAGCCTTGGCAT 234410 Query 53597 GCCGA 53601 || || Sbjct 234411 GCGGA 234415 >seq834 Length=203524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 152937 GGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCC 152996 ||||||||||||||| | ||||||| || || |||||||| || || || ||||| Sbjct 83489 GGCATCCCGAACATTAAGGAGCTTTCCTCGCAGAGGAAACACTCCAAAATTGTCACGGCC 83430 Query 152997 TACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAG 153056 |||||||||| || || || |||||||| || || ||||| || || | ||| | Sbjct 83429 AACAACGCTCAACCCACTGATCGCCAGGGCTTTGGCTGAATCACCTTCCGTCAAAATCAA 83370 Query 153057 CGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCC 153116 ||||| | ||| | || || || ||| |||||||| ||||| ||||| Sbjct 83369 GGTACACCCTTGACCTTTCTTCGTCCCCGCGTTGTTAGCGTCGTCGAGCTTACTAATTCC 83310 Query 153117 CGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTTCTTCAGTTCCTT 153161 | || | | |||| ||||||||||| || |||| ||||| Sbjct 83309 AGATATGCGAGATCTCTTGGAGCCGTCGGTCTTTTTCAAGTCCTT 83265 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 118171 GGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCC 118230 ||| |||||||| || | |||| || ||||| |||||||| ||||| ||||||||||| Sbjct 83489 GGCATCCCGAACATTAAGGAGCTTTCCTCGCAGAGGAAACACTCCAAAATTGTCACGGCC 83430 Query 118231 CACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAAT 118287 ||||||||||| || || || ||||| || || || ||||| || || | ||| Sbjct 83429 AACAACGCTCAACCCACTGATCGCCAGGGCTTTGGCTGAATCACCTTCCGTCAAAAT 83373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202907857200