Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1416 158 1e-33 seq986 143 3e-29 seq999 141 1e-28 seq1169 109 6e-19 seq972 104 3e-17 seq834 87.8 2e-12 >seq1416 Length=13108 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || || || ||||| || || |||||||| ||||| Sbjct 8516 ATGCAAATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCTCC 8457 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||| | || || ||||||||||| ||||| || || |||||| Sbjct 8456 GACACGATCGAAAACGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCAG 8397 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || || ||||| || || | || ||||| | ||||| || Sbjct 8396 CAACGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 8337 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| ||| | ||||| || ||||| Sbjct 8336 ATCCAGAAGGAATCCACCCTCCATCTCGTCCTCCGTCTCCGTGGTGG 8290 Score = 143 bits (158), Expect = 3e-29 Identities = 171/234 (73%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTA-------TTACTCTTGAGGTTGA 27458 ||||||||||| ||||| ||||| || || || | | || || ||||| || Sbjct 8751 ATGCAAATCTTCGTCAAAACGCTCACGGGAAAAANNNNNNNNNNTCACCCTGGAGGTCGA 8692 Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 || || | ||| | ||| ||||| | || || |||||||||||||| || || || Sbjct 8691 ATCGTCGGACACCATCGAGAATGTGAAGACGAAGATCCAGGACAAGGAGGGTATCCCGCC 8632 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGA 27578 |||||||| ||||| || || || || || ||||||||||| | || || || | || Sbjct 8631 CGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCCGA 8572 Query 27579 CTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || |||||||||||||||| ||||| || ||| | ||||||||||| || Sbjct 8571 CTACAACATCCAAAAGGAATCCACCCTTCACCTCGTCCTCCGTCTTCGCGGCGG 8518 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || ||||||||||| || ||||| || || ||||| Sbjct 8288 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAGTCCTCC 8229 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | || | || || || ||||||||||| ||||| || || ||| Sbjct 8228 GACACTATCGAGAACGTCAAAACGAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCAG 8169 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || ||||| | ||||||| |||||| || | ||||| || Sbjct 8168 CAACGTCTCATCTTTGCGGGGAAGCAGTTGGAGGATGGTCGTACGCTCTCCGACTACAAC 8109 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || || | ||||| || ||||| Sbjct 8108 ATTCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGTCTCCGTGGTGG 8062 Score = 125 bits (138), Expect = 8e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| |||||||| || || | ||||| ||||| Sbjct 9069 ATGCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTCC 9010 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || ||||||||||||||||| || || || |||||| Sbjct 9009 GACACCATCGAGAATGTCAAGACCAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 8950 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 || ||||| || || || || ||||| |||||||| | ||| || Sbjct 8949 CAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCAC 8906 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | ||||||||||| || || || ||||| || || Sbjct 9447 AATGCAAATCTTTGTGAAGACTTTGACCGGCAAGACCATCACGCTCGAGGTCGAATCTTC 9388 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || | || | || |||||||||||||| || ||||| || ||||| Sbjct 9387 CGACACGATCGAGAACGTCAAAACCAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCA 9328 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 ||| ||||| || || || || ||||| || ||||| | ||||||||| Sbjct 9327 GCAACGTCTCATCTTCGCCGGGAAGCAGCTTGAGGACGGTCGTACCCT 9280 >seq986 Length=59218 Score = 143 bits (158), Expect = 3e-29 Identities = 132/167 (79%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| ||||||||||| || || ||||| ||||| Sbjct 6172 ATGCAAATCTTCGTTAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCC 6231 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || |||||||||||||| |||||||| || |||||| Sbjct 6232 GACACCATTGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAG 6291 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 |||||||| || || || || ||||| |||||||| | || ||||| Sbjct 6292 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCT 6338 >seq999 Length=50871 Score = 141 bits (156), Expect = 1e-28 Identities = 168/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || |||||||| ||||| ||||| || || ||||| || |||||| | ||| | Sbjct 18155 ATACAAATCTTCGTCAAAACGCTCACGGGAAAGACAATC---CTTGAGATGGAGACCTCC 18099 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||| | ||||| ||| |||| || || ||||| || |||||| Sbjct 18098 GACACGATCGAAAACGTGAAGACGAAAATCCAGAACAAAGAAGGCATTCCCCCTGACCAG 18039 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || || ||||||||||| || || || || | ||||| || Sbjct 18038 CAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGACCGCACTCTCTCCGACTACAAC 17979 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||| ||||| || ||| | ||| | || ||||| Sbjct 17978 ATCCAAAAGGAATCCACCCTTCACCTCGTCCTCCGTTTCCGTGGTGG 17932 Score = 122 bits (134), Expect = 1e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 ||||||||| || ||||| ||||| |||||||| || || | ||||| ||||| || Sbjct 19501 GCAAATCTTCGTGAAGACCCTTACTGGCAAGACCATCACGTTGGAGGTCGAGTCTTCCGA 19442 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | ||| | ||| | ||| | || ||||||||||| ||||| || ||||| |||||||| Sbjct 19441 CACCATCGAGAATGTCAAGACCAAGATTCAGGACAACGAGGGTATCCCTCCCGACCAGCA 19382 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 ||||| || || || || ||||| |||||||| | ||| || Sbjct 19381 ACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCAC 19340 >seq1169 Length=14909 Score = 109 bits (120), Expect = 6e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| ||||| || || ||||| || || |||||||| ||||| Sbjct 5545 ATGCAAATCTTCGTCAAAACGCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCGTCC 5604 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || | || || || ||||||||||| ||||| || |||||| Sbjct 5605 GACACCATCGAGAACGTCAAAACGAAGATCCAAGACAAGGAGGGCATTCCCCCTGACCAG 5664 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || | ||| || || || | ||||| |||||||| | ||| ||| Sbjct 5665 CAACATCTCATCTTCGCCAGCAAGCAGCTCGAGGACGGTCGCACC 5709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 ||||| || || || || || ||||||||||| | || || || | ||||| || || Sbjct 5440 CGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCCGACTACAACATC 5499 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||| || ||||| ||| | ||||||||||| || Sbjct 5500 CAAAAGGAATCCACCCTCCATCTCGTCCTCCGTCTTCGCGGCGG 5543 >seq972 Length=266462 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 |||||||| |||||||| || ||||| |||| | | | | || || || || || || Sbjct 235017 GGACGCCAAGTTGCACACAGCAACCTCATCAGGAGAAGAATATTCAACAATCTCAGTACA 234958 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | ||| ||||||| || || ||||||| |||||| || ||| ||| || ||||| Sbjct 234957 GAGGTTACTGCACTTAATGGTTCCGAGGTTTTGCTGGTTGGATTTGCGGTTACACGCGTC 234898 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 ||||||| |||||| || ||| |||||| ||| || | | ||| |||| ||| | Sbjct 234897 CTTGTAGAGCATGTAGGGCACACCCGTCTCGGTCTGCGATTCCAAGATCGCGTACCACAG 234838 Query 81087 CTCGCGCGCCTTGACCACCTTGCGG 81111 || | |||||||| ||||||| Sbjct 234837 CTTTTGGGCCTTGACGGTCTTGCGG 234813 Score = 93.3 bits (102), Expect = 5e-14 Identities = 246/374 (66%), Gaps = 4/374 (1%) Strand=Plus/Minus Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 |||||||||| || || || ||||| ||| |||| | |||||| || | || || Sbjct 234364 CCACCCTGGTCAACATACCGCGCAGTATTGTTGTATACCCTCAACATGGGCACAATCCCG 234305 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTT--GCTGATTG 81496 | || | |||||||| || | || ||| ||| ||||| | ||| || ||| Sbjct 234304 TTGGAGTACCCGTTCGTGCCAGCAATGTACGATCCCAAAGCGCGAATCTTATGCACATT- 234246 Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556 || |||||| || || | || || ||| || || |||| || || |||| Sbjct 234245 -AATACCGATACCGCCAGCGGTTTTGGAGATCATCGCGCAAGTTTTCAGAGTTTCGTAAA 234187 Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTT 81616 | || |||||| || | ||||| |||||||||||| || | || ||| Sbjct 234186 TGCCGTCGATGGAGTCGTCCTTCATCGTGAGCAAGAAACAGGAGGAGAGTTGCGGGTGAG 234127 Query 81617 TTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGT 81676 | |||||||||||| || || || | ||||| |||| || | ||||| || | Sbjct 234126 GGGTGCCGGCATTGAAGAGGGTGGGTGATGCGTGGGTGAAGTACTTTTCGGACATGAGTT 234067 Query 81677 CATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 | || ||||| || || | |||||||| |||||||||| ||| |||||||| | Sbjct 234066 CGTATGTTTCGATGGCGGCATCTACGTCGTCACCATGAATACCGACAGCAACACGCATGA 234007 Query 81737 ACATGTACTGGGGC 81750 ||||| ||| ||| Sbjct 234006 GCATGTGCTGAGGC 233993 >seq834 Length=203524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 31153 GAGAAGGAGCTCAAGAAAACAGATGGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAG 31212 || ||||| | || || || || || ||||| | ||||| || | |||||| ||| Sbjct 83262 GAAAAGGACTTGAAAAAGACCGACGGCTCCAAGAGATCTCGCATATCTGGAATTAGTAAG 83321 Query 31213 CTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATTACC 31272 ||||||||||| ||| || || || | || || | ||| || | ||| | || Sbjct 83322 CTCGACGACGCTAACAACGCGGGGACGAAGAAAGGTCAAGGGTGTACCTTGATTTTGACG 83381 Query 31273 GAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCG---CAAT 31329 || ||||| || || || || || || || ||| ||||| ||||| || || |||| Sbjct 83382 GAAGGTGATTCAGCCAAAGCCCTGGCGATCAGTGGGTTGAGCGTTGTTGGCCGTGACAAT 83441 Query 31330 GCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTC 31382 || || |||||||| || ||||| |||| | ||| ||||| || ||||| Sbjct 83442 ---TTTGGAGTGTTTCCTCTGCGAGGAAAGCTCCTTAATGTTCGGGATGCCTC 83491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296755323680