Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1416 100 2e-16 >seq1416 Length=13108 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| ||| ||||| || ||||| || || || || || || Sbjct 8299 AGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 8358 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||||||||| ||||| || || | ||| || ||||| || || | ||| ||| Sbjct 8359 CCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCC 8418 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || || || ||| | || ||||| | |||||| || | ||| Sbjct 8419 TTGTCCTGGATC-TTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGT 8477 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||||| || || || ||||| Sbjct 8478 GATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||||| || |||||| |||||||| || || || || || || Sbjct 8071 AGACGAAGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGA 8130 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || || ||||| || | ||| || || || || || | |||||| Sbjct 8131 CCATCCTCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCC 8190 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || ||||| ||| | || ||||| | ||||||||| | || Sbjct 8191 TTGTCTTGGATC-TTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGT 8249 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| | || |||||||| || ||||| Sbjct 8250 GATCGTCTTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | || || ||| |||||||| ||||| || || || Sbjct 8518 CCGCCGCGAAGACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAG 8577 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || |||||||| ||||| || || | ||| || ||||| ||||| Sbjct 8578 AGAGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGG 8637 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 8638 ATACCCTCCTTGTCCTGGATCTT 8660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722258341962