Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1416 167 5e-36 seq999 152 1e-31 seq986 140 8e-28 seq1169 123 6e-23 >seq1416 Length=13108 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || ||||| || || |||||||| || || | ||||| | || ||| Sbjct 8305 AGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 8364 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| |||||||| || ||||| ||||| || || | ||||||||||||| Sbjct 8365 TCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCC 8424 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||||||||| ||||| ||| || ||||| || ||||| ||| Sbjct 8425 TGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTC 8484 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || || || || | ||||| Sbjct 8485 TTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || || ||||| || || | || || | ||||| Sbjct 8077 AGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCC 8136 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| || ||||| || ||||| |||| || |||||||| Sbjct 8137 TCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCT 8196 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| ||||| ||||| ||||| ||| || || ||||||||||||||| Sbjct 8197 TGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTC 8256 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | ||||| Sbjct 8257 TTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 141 bits (156), Expect = 2e-28 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | || || || |||||||| || |||||||| || ||||| |||||||| ||| Sbjct 9280 AGGGTACGACCGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGA 9339 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | |||||||||||||| ||||| ||| ||||| ||||| ||||| || ||| ||| Sbjct 9340 ATGCCTTCCTTGTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACC 9399 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| ||||| || || | |||||| ||||| | |||||| Sbjct 9400 TCGAGCGTGATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCATT 9447 Score = 136 bits (150), Expect = 9e-27 Identities = 166/228 (73%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| |||||||| ||||| || ||||||||||| || || | || || Sbjct 8524 CGAAGACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTG 8583 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || || || ||||| |||||||| || ||||| ||||| || || | || Sbjct 8584 CGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCC 8643 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| ||||| || ||||||||||| || ||| ||||| || Sbjct 8644 TCCTTGTCCTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGG 8703 Query 211074 GTGA-------TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| | ||||||||||| || || || || | ||||| Sbjct 8704 GTGANNNNNNNNNNTTTTTCCCGTGAGCGTTTTGACGAAGATTTGCAT 8751 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || ||||||||||| |||||||| || ||||| ||||| || || | || ||| Sbjct 8912 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCC 8971 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| || || || ||||||||||| || || ||||| | ||| Sbjct 8972 TTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAACGTG 9031 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || ||||| || || | ||||| Sbjct 9032 ATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 >seq999 Length=50871 Score = 152 bits (168), Expect = 1e-31 Identities = 158/204 (77%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| ||||| || ||||||||||| || || | || || | | || Sbjct 17947 AGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTCC 18006 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| |||||||| || ||||| |||||||| |||| ||||| |||| | Sbjct 18007 TCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTTC 18066 Query 211023 TGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| ||| || |||||||||||||| ||||| ||| | || | ||| || ||| || Sbjct 18067 TGGAT-TTTCGTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATCTCAAG---GATTGT 18122 Query 211082 CTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||||||| || || || || Sbjct 18123 CTTTCCCGTGAGCGTTTTGACGAA 18146 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || ||||||||||| |||||||| || ||||| ||||| ||||| | || || Sbjct 19346 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGAGGGATACCCTCG 19405 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| || || || ||||||||||| || || ||||| | ||| Sbjct 19406 TTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAACGTG 19465 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || || || ||||| || || Sbjct 19466 ATGGTCTTGCCAGTAAGGGTCTTCACGAA 19494 >seq986 Length=59218 Score = 140 bits (154), Expect = 8e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | || || || ||||||||||| ||||||||||| || || |||||||| ||| Sbjct 6338 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 6279 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | ||||||||||||||| ||||| || ||||| || |||||||| || || ||| Sbjct 6278 ATTCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 6219 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| ||||| || ||||| || || | ||||| Sbjct 6218 TCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCAT 6172 >seq1169 Length=14909 Score = 123 bits (136), Expect = 6e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || || |||||||||| |||||||| || |||| |||||||| |||| || ||| Sbjct 5702 CCGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATGCCCTCC 5643 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| ||| ||||| ||||||||||| || || ||||| || ||| Sbjct 5642 TTGTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 5583 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| || || || || | ||||| Sbjct 5582 ATTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCAT 5545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159123573970610