Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1416 93.3 4e-14 seq1169 89.7 4e-13 seq986 87.8 2e-12 >seq1416 Length=13108 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| || || || || || || |||| || || || |||| ||||| || Sbjct 8313 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCAAGTTG 8372 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||| || || || ||||| |||||||||| ||| | | || |||||| ||| || Sbjct 8373 TTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGGATCTT 8432 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | || | | | | ||| ||| |||||||| || | ||||| | || ||||| Sbjct 8433 CGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTCCCCGT 8492 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || ||||||||||| Sbjct 8493 GAGGGTTTTGACGAAGATTTGCAT 8516 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/198 (69%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || || || |||| || || || |||| || || |||||||| || || Sbjct 8554 TCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGTTTGCCGGCGAAG 8613 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || ||||| |||||||||| || | | ||| |||||| ||| ||| || | || Sbjct 8614 ATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGTCTTCACATTC 8673 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATAC-------TTTTTCCCGTCAGCGT 39266 | | || || ||| || || |||| |||| |||||||||| ||||| Sbjct 8674 TCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNNNNNNNNTTTTTCCCGTGAGCGT 8733 Query 39267 TTTAACAAAGATTTGCAT 39284 ||| || ||||||||||| Sbjct 8734 TTTGACGAAGATTTGCAT 8751 >seq1169 Length=14909 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 39128 CGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTT 39187 |||| || ||||| |||| || || || ||| | |||||||| | ||| | || ||| | Sbjct 5701 CGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATGCCCTCCT 5642 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| ||||| || | | || ||| ||||||||| || | |||| Sbjct 5641 TGTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCAAGGGTGA 5582 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||| |||||||| || ||||||||||| Sbjct 5581 TTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCAT 5545 >seq986 Length=59218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 39128 CGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTT 39187 |||| || ||||| ||||| || || ||||||||||||||||| | ||| | | || | Sbjct 6328 CGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCT 6269 Query 39188 TGTCCATGATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGT 39245 ||||| ||| | | || |||| ||| | | | || ||| |||||||| || | || Sbjct 6268 TGTCC-TGAATCTTGGTCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGT 6211 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| | || ||||| || || ||||| ||||||||||| Sbjct 6210 GATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCAT 6172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429535580043482