Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1416 107 1e-18 seq999 100 2e-16 >seq1416 Length=13108 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||||||||| || || ||||| || || || || ||| | Sbjct 8516 ATGCAAATCTTCGTCAAAACCCTCACGGGGAAGACAATCACCCTTGAGGTGGAGTCCTCC 8457 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| ||||| | || || || || Sbjct 8456 GACACGATCGAAAACGTGAAGACGAAGATCCAGGACAAGGAAGGAATCCCCCCCGACCAG 8397 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || |||||||||||||| ||||||| ||||| | ||| |||||| Sbjct 8396 CAACGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGCCGCACCCTCTCCGACTACAAC 8337 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 8336 ATCCAGAAGGAATCCAC 8320 Score = 102 bits (112), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 9/205 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGA-------TCACTCTCGAAGTTGA 23663 ||||| || ||||| ||||| ||||||||||||| |||| || || || || Sbjct 8751 ATGCAAATCTTCGTCAAAACGCTCACGGGAAAAANNNNNNNNNNTCACCCTGGAGGTCGA 8692 Query 23664 CTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGC 23722 || ||||||| | || ||| | || || || | | ||||| || ||| | |||| Sbjct 8691 ATCGTCGGACACCATCGAGAATGTGAAGACGAAGA-TCCAGGACAAGGAGGGTATCCCGC 8633 Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCG 23782 | || || || ||| | || || |||||||||||||| || |||| |||||| | || Sbjct 8632 CCGACCAGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGGCCGCACTCTCTCCG 8573 Query 23783 ATTACAACATACAAAAAGAGTCCAC 23807 | |||||||| ||||| || ||||| Sbjct 8572 ACTACAACATCCAAAAGGAATCCAC 8548 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || || ||||||||||||||||| || ||| | Sbjct 8288 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACGATCACTCTCGAAGTGGAGTCCTCC 8229 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || | ||||| || || ||||| || ||| | || || ||||| Sbjct 8228 GACACTATCGAGAACGTCAAAAC-GAAGATCCAAGACAAGGAGGGTATTCCCCCTGATCA 8170 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| || || || |||| || | || || | ||| ||||| Sbjct 8169 GCAACGTCTCATCTTTGCGGGGAAGCAGTTGGAGGATGGTCGTACGCTCTCCGACTACAA 8110 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 8109 CATTCAGAAGGAGTCGAC 8092 >seq999 Length=50871 Score = 100 bits (110), Expect = 2e-16 Identities = 144/199 (72%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 || || || ||||| ||||| ||||||||||| || ||| || || | || || | Sbjct 18155 ATACAAATCTTCGTCAAAACGCTCACGGGAAAGACAATC---CTTGAGATGGAGACCTCC 18099 Query 23671 GACACTGTTGAAATATTAAA-ACAAAAAATTGCTGA-CAAAGAAGGTGTACCGCCAGATC 23728 ||||| | |||| | || || |||| | | || ||||||||| | || || || | Sbjct 18098 GACACGATCGAAAACGTGAAGACGAAAA--TCCAGAACAAAGAAGGCATTCCCCCTGACC 18041 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| | || || |||||||||||||| || ||||| |||||| | ||| |||| Sbjct 18040 AGCAACGTCTCATCTTCGCCGGCAAACAACTCGAGGACGACCGCACTCTCTCCGACTACA 17981 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| || ||||| Sbjct 17980 ACATCCAAAAGGAATCCAC 17962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338001715292312