Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1416 152 1e-31 seq999 114 3e-20 seq986 109 1e-18 seq1169 105 2e-17 >seq1416 Length=13108 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| |||||||| || |||| ||||| |||| | || | || ||| Sbjct 8305 AGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 8364 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || |||||||| || ||||| |||||||| || || ||||||||||| Sbjct 8365 TCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCC 8424 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| |||||| ||||| |||| ||||| || | ||||| ||| Sbjct 8425 TGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTC 8484 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||||| | ||| | |||||| Sbjct 8485 TTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 138 bits (152), Expect = 3e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| ||||| || |||||||| ||||||| ||||| |||| | ||| Sbjct 8524 CGAAGACGGAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTG 8583 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || || || || || |||||||| || ||||| ||||||||||| ||||| Sbjct 8584 CGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCC 8643 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||||| ||||||||||| || | ||| || || | Sbjct 8644 TCCTTGTCCTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGG 8703 Query 225673 GTGA 225676 |||| Sbjct 8704 GTGA 8707 Score = 127 bits (140), Expect = 5e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 225546 CAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGG 225605 |||||| | || || || |||||||| || |||||||| || ||||| ||||||||||| Sbjct 8902 CAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGG 8961 Query 225606 AATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCAC 225665 ||||| |||||||| || ||||| ||| ||| ||||||||||| || | || || Sbjct 8962 GATACCCTCCTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGAC 9021 Query 225666 GTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| |||||||| || | || || | ||| | |||||| Sbjct 9022 CTCCAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || || | ||||| |||| | || | ||||| Sbjct 8077 AGCACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCC 8136 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||||||| || ||||| || ||||| || || || |||||||| ||||||||| Sbjct 8137 TCCAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCT 8196 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || ||||| ||||| |||| ||||| || | ||||||||| Sbjct 8197 TGGATCTTCGTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTC 8256 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | || | |||||| Sbjct 8257 TTGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 120 bits (132), Expect = 7e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || ||||||||||| |||||||| || ||||| ||||| || ||||| |||||| Sbjct 9289 CCGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCC 9348 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| || || ||||| ||||| || | ||| || || | |||| Sbjct 9349 TTGTCCTGAATCTTGGTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTG 9408 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || |||||||| |||||||| || | || | ||||||| Sbjct 9409 ATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCATT 9447 >seq999 Length=50871 Score = 114 bits (126), Expect = 3e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225546 CAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGG 225605 |||||| | || || || |||||||| || |||||||| || ||||| |||||||| || Sbjct 19336 CAAAGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGAGG 19395 Query 225606 AATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCAC 225665 ||||| || ||||| || ||||| ||| ||| ||||||||||| || | || || Sbjct 19396 GATACCCTCGTTGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGAC 19455 Query 225666 GTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGC 225711 || |||||||| |||||||| || | || || | ||| | |||| Sbjct 19456 CTCCAACGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGC 19501 Score = 84.2 bits (92), Expect = 5e-11 Identities = 131/185 (71%), Gaps = 12/185 (6%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||| ||||| || |||||||| ||| ||| ||||| |||| | ||| | || || Sbjct 18178 AGGATGAGGTGAAGGGTGGATTCCTTTGGGATGTTGTAGTCGGAGAGAGTGCGGCCCTCG 18237 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGT----CGGG-CGGA----ATACCT 225612 || || || || |||||||| || ||||| || |||| |||| ||||| Sbjct 18238 ---AGTTGTTTGCCGGCGAAGATGAGACGTTGCAGGAAACGCGGGTCGGACAGGATACCC 18294 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||||| ||||||||||| || | ||| || || | Sbjct 18295 TCCTTGTCCTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGG 18354 Query 225673 GTGAT 225677 ||||| Sbjct 18355 GTGAT 18359 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 ||||||||||||| ||||| |||||| | |||||||| ||||||| |||||||||| Sbjct 19077 GTTGGTCGGGCGGGATACCCTCCTTGCCCTGGATCTTCGTCTTCACATTCTCGATGGTGT 19136 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 | || | ||| | || | ||||| || || || || | ||||| | ||| | ||||| Sbjct 19137 CCGACGATTCGGCCTCCAGGGTGATAGTTTTCCCTGTGAGCGTTTTGACGAAGATTTGCA 19196 Query 225713 T 225713 | Sbjct 19197 T 19197 >seq986 Length=59218 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || ||||||||||| || || ||||| || ||||| |||||| Sbjct 6329 CCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCC 6270 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| ||| || || |||||||| || | ||||| || | ||| Sbjct 6269 TTGTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTG 6210 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||||||| | || || | ||| | |||||| Sbjct 6209 ATAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCAT 6172 >seq1169 Length=14909 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| | |||||||| || |||| ||||| || ||||| || ||| Sbjct 5702 CCGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATGCCCTCC 5643 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| || || ||||||||||| || | ||||| || | ||| Sbjct 5642 TTGTCTTGGATCTTCGTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 5583 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| ||||| | ||||| | ||| | |||||| Sbjct 5582 ATTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCAT 5545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192501955408316