Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1026 96.9 3e-15 >seq1026 Length=25707 Score = 96.9 bits (106), Expect = 3e-15 Identities = 174/254 (69%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 ||||||||| || || || || || |||||||| || || ||||| | ||||| Sbjct 13004 TACATTTCACTGTGAATGTTCTCAATCATGATCTGAAAGCCATAGAAGCAGCGGGCTTCA 13063 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | | || ||||| || | || | || || | ||||||||| || ||||||||| Sbjct 13064 GGGATCTGGACTTCATTGCTGAAGCGCTCGACGAGGTTTTCGTTGACGATACCGTCAGAC 13123 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTT 5018 || || || || || | || | || || ||||| ||||||| || || ||| Sbjct 13124 GCAGCGAAGAAGGCAAGGACGCGGGAGATGAAGTAACGTTCGTCGTCATTGAGACGGTTT 13183 Query 5019 TTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCC 5078 | ||||| | || || || | | || ||||||||| ||||||| || || ||||| Sbjct 13184 TCCCAGTCGACCAGGTCCTTGGAAAGGTCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCG 13243 Query 5079 GCTTTTTTGTACAT 5092 || ||||||||||| Sbjct 13244 GCCTTTTTGTACAT 13257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039638267362