Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1416 111 4e-19 seq986 100 7e-16 seq999 84.2 5e-11 >seq1416 Length=13108 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| || || || || || ||||||||||| |||| | || | Sbjct 8298 GAGACGGAGGACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 8357 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || ||| ||||||||||| || | |||||||| | | ||||||||| Sbjct 8358 GCCGTCTTCAAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTC 8417 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || || | || | |||| || ||| || ||||| || Sbjct 8418 CTTGTCCTGGATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGT 8477 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| || || ||||||| ||||| Sbjct 8478 GATTGTCTTCCCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/220 (69%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || ||||| || || || |||||||||||||| |||| | ||| | || || Sbjct 8532 GAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTC 8591 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| ||||||||||| || | |||||||| | || ||| || ||||| || Sbjct 8592 CTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTC 8651 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAA---- 152067 || || || || ||| |||| | | |||| || || || || || || | Sbjct 8652 CTGGATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNN 8711 Query 152068 ---TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| |||||||| || || ||||||| ||||| Sbjct 8712 NNNNNNTTTTTCCCGTGAGCGTTTTGACGAAGATTTGCAT 8751 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| || | |||||||| | || ||| || ||||| || ||||| || Sbjct 8927 TTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTG 8986 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| ||| ||| || || | || || || ||||| || Sbjct 8987 GTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAACGTGATGGTCTTGCCAGTA 9046 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| ||||| Sbjct 9047 AGGGTCTTCACGAAGATTTGCAT 9069 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 |||||||||||||| || | |||||||| | | || |||||||| || ||||| || Sbjct 9304 TTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTG 9363 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | |||| ||| || || || || || || || ||||| || Sbjct 9364 GTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTGATGGTCTTGCCGGTC 9423 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 | ||||||||| |||| |||||| Sbjct 9424 AAAGTCTTCACAAAGATTTGCATT 9447 >seq986 Length=59218 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||||||||| | ||||||||| | | ||||||||||| || ||||| || Sbjct 6314 TTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTG 6255 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| | || | | |||| ||| ||| || || || || ||||| |||||||| Sbjct 6254 GTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTA 6195 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| ||||| Sbjct 6194 AGGGTCTTAACGAAGATTTGCAT 6172 >seq999 Length=50871 Score = 84.2 bits (92), Expect = 5e-11 Identities = 146/208 (70%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || ||||| || || || |||||||||||||| |||| | ||| | | || Sbjct 17946 GAGGACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTC 18005 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT-TT 152010 || || ||| ||||||||||| || | |||||||| | | || ||||| || || Sbjct 18006 CTCGAGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTT 18065 Query 152011 CTTGAATTTTTTGT-TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || |||| || || || | || | |||| || |||| | ||||| || Sbjct 18066 CTGGA--TTTTCGTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATCTCAAG---GATT 18120 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGA 152097 || || |||||||| || || ||||||| Sbjct 18121 GTCTTTCCCGTGAGCGTTTTGACGAAGA 18148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153792504708294