Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophlyctis_20rosea_20[genbank_20GCA_5F002214945.1_202017-07-05] 1,914 sequences; 46,846,657 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1416 140 2e-28 seq999 118 8e-22 seq986 114 9e-21 seq1169 95.1 9e-15 >seq1416 Length=13108 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| || |||||||| |||| ||| || | || || Sbjct 8079 CACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGACCATCCTC 8138 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||||||| |||||||| | ||| |||||||| | || | ||| ||||| || Sbjct 8139 CAACTGCTTCCCCGCAAAGATGAGACGTTGCTGATCAGGGGGAATACCCTCCTTGTCTTG 8198 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| | || | |||| | || ||||||| ||| ||||| || | || ||||||| Sbjct 8199 GATCTTC-GTTTTGACGTTCTCGATAGTGTCGGAGGACTCCACTTCGAGAGTGATCGTCT 8257 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||||||||||||| ||||||||||| Sbjct 8258 TGCCGGTGAGGGTCTTCACAAAGATTTGCAT 8288 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| ||||| ||||||||||| |||| ||| ||| |||| || Sbjct 8308 ACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCA 8367 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || ||||| ||||| | ||| ||||| || | || | |||||||| ||| Sbjct 8368 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGG 8427 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| || | || ||||||| ||| |||||||| | || || ||||| Sbjct 8428 ATCTTCGTCTTCACGTTTTCGATCGTGTCGGAGGACTCCACCTCAAGGGTGATTGTCTTC 8487 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || |||||||||||||| Sbjct 8488 CCCGTGAGGGTTTTGACGAAGATTTGCAT 8516 Score = 120 bits (132), Expect = 2e-22 Identities = 155/216 (72%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| ||||||||||||||||| |||| ||| ||| |||| || Sbjct 8536 ACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCG 8595 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || ||||| ||||| | ||| ||||| || | || | ||| ||||| ||| Sbjct 8596 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGG 8655 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA-------T 44301 |||||| ||||| | | |||||||| | ||||| ||||||| || | Sbjct 8656 ATCTTCGTCTTCACATTCTCGATGGTGTCCGACGATTCGACCTCCAGGGTGANNNNNNNN 8715 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||||| || || |||||||||||||| Sbjct 8716 NNTTTTTCCCGTGAGCGTTTTGACGAAGATTTGCAT 8751 Score = 113 bits (124), Expect = 3e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| ||||| ||||| | ||| ||||| || | || | ||| |||| Sbjct 8913 CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGCGGGATACCCTCCT 8972 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||| ||| | | | |||||||||| || || ||||||| ||| | Sbjct 8973 TGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAACGTGA 9032 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || || ||||||||||||||||||||||| Sbjct 9033 TGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCAT 9069 Score = 102 bits (112), Expect = 6e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||||||||| ||||| | ||| ||||| || | || | ||||||| Sbjct 9290 CGTCCTCAAGCTGCTTCCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCCT 9349 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 | ||| ||||| | || | |||| | || ||||||| ||||| ||||| | ||| Sbjct 9350 TGTCCTGAATCTTG-GTTTTGACGTTCTCGATCGTGTCGGAAGATTCGACCTCGAGCGTG 9408 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || | |||||||| ||||||||||| Sbjct 9409 ATGGTCTTGCCGGTCAAAGTCTTCACAAAGATTTGCAT 9446 >seq999 Length=50871 Score = 118 bits (130), Expect = 8e-22 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| ||||||||||||||||| |||| ||| ||| ||||| || Sbjct 17950 ACGAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGGTCGTCCTCG 18009 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || ||||| ||||| | ||| ||||| || | || | ||||| || | | Sbjct 18010 AGTTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGGGGAATGCCTTCTTTGTTCTGG 18069 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || ||| ||||| || | || ||||||| || |||| ||| | || |||||| Sbjct 18070 ATTTTCGTCTTCACGTTTTCGATCGTGTCGGAGGTCTCCATCTCAA---GGATTGTCTTT 18126 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||||||||| || Sbjct 18127 CCCGTGAGCGTTTTGACGAAGATTTGTAT 18155 Score = 109 bits (120), Expect = 4e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| ||||| ||||| | ||| ||||| || | ||| | ||| || | Sbjct 19347 CGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCGGGAGGGATACCCTCGT 19406 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||| ||| | | | |||||||||| || || ||||||| ||| | Sbjct 19407 TGTCCTGAATCTTGGTCTTGACATTCTCGATGGTGTCGGAAGACTCGACCTCCAACGTGA 19466 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| || || ||||||||||||||||||||| || Sbjct 19467 TGGTCTTGCCAGTAAGGGTCTTCACGAAGATTTGCTTG 19504 >seq986 Length=59218 Score = 114 bits (126), Expect = 9e-21 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| ||||| ||||| | ||||||||| || | || | ||||||| Sbjct 6328 CGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATTCCTTCCT 6269 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||| ||| | | | |||||||||| || |||||||| | || | Sbjct 6268 TGTCCTGAATCTTGGTCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGA 6209 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | ||||| ||||| |||||||| ||||||||||||||| || Sbjct 6208 TAGTCTTGCCCGTAAGGGTCTTAACGAAGATTTGCATGGTG 6168 >seq1169 Length=14909 Score = 95.1 bits (104), Expect = 9e-15 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| || |||||||| | ||| ||||| | | | ||||| || | || | || |||| Sbjct 5701 CGTCCTCGAGCTGCTTGCTGGCGAAGATGAGATGTTGCTGGTCAGGGGGAATGCCCTCCT 5642 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 | || |||||| | || | |||| | |||||||||| || |||||||| | || Sbjct 5641 TGTCTTGGATCTTC-GTTTTGACGTTCTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 5583 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| |||||||| || || ||||||||||||||| Sbjct 5582 ATTGTCTTCCCCGTGAGCGTTTTGACGAAGATTTGCATG 5544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982002548938